RNA id: TU300417


Basic Information

Item Value
RNA id TU300417
length 891
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G264721
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 4335074 ~ 4336258 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACGTGCTCCGCGGGCCACCCCTGCACATGTTTGATGAGGTTCTCATTGAAGTGCGCGGCCAGCGTGGGTGTGAAGGAACATGTTGCTCTGCCTGGGGCTGTGCCAGCAGATACTGAACCCGGGGGCATCACTCCGCTGACTACACCTGGTCCTTGACCACCACCGCCACCGCCATTATTACTGCTGCTGTTACTGCCCATGTGGTTCGAAGCTGGAGATGGACTTCTCTGACTGCTGCAAATCACAAACAGTGCGTCCGTGGAGAATTGCCGTTGTCGTGATGTTTGTCTGTGGGGTGGGACTGCTGGGACGACGGTGGAGGGAGAGAACTGGACTTAACTGTCATAACGTTCATCTGAGAAAGAGAGGGAGAGTGCGTTACAAAGCCATAGTTTCATTTGACATCAGTCATCCCATTTGACTGCTGTATACCTTGGTCTGTGAGGAGACTGGTGTGGTGCTGAGGGGCGGTTTGAGGGAGGCTGTGTTGGTCTGCGGCGTGCTGATTCTGGGAGACACGTACGACCGAGGAGAGGAAGCGTCTGATGTCAGAGACATTGGAGACTGGCTGGACTGCTGGGCTACTCCACAGGACAAATGAGAGAGGAGAAAGAGATAAGGTGAAGAGATATAGTACCTTAAGTAATCACAACAGGCATGTCATTGGTAACAAATGCAGTTCTGGCTCTGATTCCAATCTAGGTTTGCGCACTGTGCAGTGTTCTTATCATTAACTAAGACTAAGATATTTGTTAACTGAAAAAGCTGAAATATAAATGAAATGTTTTTTTGAAATGTTGCCATGAAATAAGTTGAAGCACTTAAATAATATTTATCTTTTAAAAAAAAACTAATAAAAATGGCAAAAGCACACAAGTTAAACTGAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300453 lncRNA downstream 13356 4241756 ~ 4321718 (-) True G264755
TU300425 lncRNA downstream 176927 4157641 ~ 4158147 (-) True G264728
TU300364 lncRNA downstream 289013 4045856 ~ 4046061 (-) True G264677
TU300362 lncRNA downstream 291725 4042945 ~ 4043349 (-) True G264675
TU300296 lncRNA downstream 296973 4037206 ~ 4038101 (-) True G264610
TU300492 lncRNA upstream 25304 4361562 ~ 4361794 (-) True G264794
TU300499 lncRNA upstream 43166 4379424 ~ 4379654 (-) True G264801
TU300502 lncRNA upstream 63964 4400222 ~ 4401481 (-) False G264803
TU300505 lncRNA upstream 63964 4400222 ~ 4401601 (-) True G264803
TU300500 lncRNA upstream 65670 4401928 ~ 4402606 (-) True G264802
CI01000063_04183070_04264881.mRNA mRNA downstream 70193 4182580 ~ 4264881 (-) True CI01000063_04183070_04264881
CI01000063_04101695_04159421.mRNA mRNA downstream 175653 4101402 ~ 4159421 (-) True CI01000063_04101695_04159421
CI01000063_04056574_04087071.mRNA mRNA downstream 246459 4056196 ~ 4088615 (-) True CI01000063_04056574_04087071
CI01000063_03894170_03896007.mRNA mRNA downstream 438878 3894170 ~ 3896196 (-) True CI01000063_03894170_03896007
CI01000063_03879695_03885921.mRNA mRNA downstream 449056 3879291 ~ 3886018 (-) True CI01000063_03879695_03885921
CI01000063_04471188_04479927.mRNA mRNA upstream 133642 4469900 ~ 4479927 (-) True CI01000063_04471188_04479927
CI01000063_04667829_04669237.mRNA mRNA upstream 330908 4667166 ~ 4669237 (-) True CI01000063_04667829_04669237
CI01000063_04834309_04848552.mRNA mRNA upstream 497789 4834047 ~ 4848720 (-) True CI01000063_04834309_04848552
CI01000063_05056169_05057789.mRNA mRNA upstream 719911 5056169 ~ 5057855 (-) True CI01000063_05056169_05057789
CI01000063_05070661_05081280.mRNA mRNA upstream 734165 5070423 ~ 5081280 (-) True CI01000063_05070661_05081280
TU298806 other downstream 1608539 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 2007355 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 2156738 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 2664998 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 826236 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 852145 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 913747 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 913801 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 913908 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile