RNA id: TU299807


Basic Information

Item Value
RNA id TU299807
length 288
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G264142
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 4345434 ~ 4345721 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTACATCCACTCTCCAGTGCAGACCTGCAGTTTCCACCTCCAGCAGTCTGGGAAACACTGTCAAATGGCTGACAAAGCACTGAAACAAAGTTCTGACTTTAATGCGTTTCTCAAAAAAATCCATATTAATACTACCCTCAGGGACAAACATTAAGATTTTAATGGTTTTGATAGGGTCTTGAAGTCTTGATGATACTATATATTAGGTTTCTATCTTGTAATATGCCACACCAGCTTTCATTTTAATAACCATTATGTTATTATGATTTTTTCTCCTTGCTACCTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299603 lncRNA upstream 488365 3856734 ~ 3857069 (+) True G263947
TU299597 lncRNA upstream 537635 3805499 ~ 3807799 (+) True G263941
TU299592 lncRNA upstream 570946 3772468 ~ 3774488 (+) True G263936
TU299601 lncRNA upstream 729967 3609493 ~ 3615467 (+) True G263945
TU299624 lncRNA upstream 738485 3606620 ~ 3606949 (+) True G263968
TU299835 lncRNA downstream 49147 4394868 ~ 4400467 (+) True G264162
TU299844 lncRNA downstream 58151 4403872 ~ 4404343 (+) True G264171
TU299845 lncRNA downstream 60311 4406032 ~ 4406271 (+) True G264172
TU299847 lncRNA downstream 63967 4409688 ~ 4410067 (+) True G264174
TU299850 lncRNA downstream 66432 4412153 ~ 4412491 (+) True G264177
CI01000063_04310020_04338879.mRNA mRNA upstream 6416 4310020 ~ 4339018 (+) True CI01000063_04310020_04338879
CI01000063_04168036_04180451.mRNA mRNA upstream 164918 4166544 ~ 4180516 (+) True CI01000063_04168036_04180451
CI01000063_04026940_04034428.mRNA mRNA upstream 310731 4026940 ~ 4034703 (+) True CI01000063_04026940_04034428
CI01000063_03991410_04022994.mRNA mRNA upstream 321735 3991301 ~ 4023699 (+) True CI01000063_03991410_04022994
CI01000063_03920353_03956590.mRNA mRNA upstream 388844 3920353 ~ 3956590 (+) True CI01000063_03920353_03956590
CI01000063_04345980_04349791.mRNA mRNA downstream 259 4345980 ~ 4350236 (+) True CI01000063_04345980_04349791
CI01000063_04479946_04487899.mRNA mRNA downstream 134103 4479824 ~ 4487907 (+) True CI01000063_04479946_04487899
CI01000063_04524187_04533040.mRNA mRNA downstream 177733 4523454 ~ 4533366 (+) True CI01000063_04524187_04533040
CI01000063_04544999_04552162.mRNA mRNA downstream 198321 4544042 ~ 4552265 (+) True CI01000063_04544999_04552162
CI01000063_04568412_04568747.mRNA mRNA downstream 222563 4568284 ~ 4569210 (+) True CI01000063_04568412_04568747
TU297890 other upstream 1630917 2713615 ~ 2714517 (+) True G262436
TU297877 other upstream 2102469 2241408 ~ 2242965 (+) True G262423
TU297621 other upstream 3200427 1143871 ~ 1145007 (+) True G262194
TU297466 other upstream 3634880 710173 ~ 710554 (+) True G262060
TU297382 other upstream 3678052 665800 ~ 667382 (+) True G261984
TU301223 other downstream 1568062 5913783 ~ 5919029 (+) True G265391
TU301297 other downstream 1989557 6335278 ~ 6335601 (+) True G265462

Expression Profile