RNA id: TU300499


Basic Information

Item Value
RNA id TU300499
length 231
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G264801
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 4379424 ~ 4379654 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGATCCGCAACCATGATGTGCTGTAGTCCGTTCATAGCCTACTGTTAGCTTTTTATATCTGACGACTTTATTTAGGCTTCAAAATGTATAAACGTTGTGTTAACTTGTAAAGATTATCTTGATAGACAAAACGTGTAAGTGTCATAACCCTTTGTTAAACACAGAGCTTATTTTTTGCGATTTTCCAAAAGTCTATGGGAAAAATGCATAGGCTTTCGATCGAGGGAACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300492 lncRNA downstream 17630 4361562 ~ 4361794 (-) True G264794
TU300417 lncRNA downstream 43166 4335074 ~ 4336258 (-) True G264721
TU300453 lncRNA downstream 57706 4241756 ~ 4321718 (-) True G264755
TU300425 lncRNA downstream 221277 4157641 ~ 4158147 (-) True G264728
TU300364 lncRNA downstream 333363 4045856 ~ 4046061 (-) True G264677
TU300502 lncRNA upstream 20568 4400222 ~ 4401481 (-) False G264803
TU300505 lncRNA upstream 20568 4400222 ~ 4401601 (-) True G264803
TU300500 lncRNA upstream 22274 4401928 ~ 4402606 (-) True G264802
TU300515 lncRNA upstream 23292 4402946 ~ 4403535 (-) False G264805
TU300514 lncRNA upstream 23307 4402961 ~ 4403561 (-) True G264805
CI01000063_04183070_04264881.mRNA mRNA downstream 114543 4182580 ~ 4264881 (-) True CI01000063_04183070_04264881
CI01000063_04101695_04159421.mRNA mRNA downstream 220003 4101402 ~ 4159421 (-) True CI01000063_04101695_04159421
CI01000063_04056574_04087071.mRNA mRNA downstream 290809 4056196 ~ 4088615 (-) True CI01000063_04056574_04087071
CI01000063_03894170_03896007.mRNA mRNA downstream 483228 3894170 ~ 3896196 (-) True CI01000063_03894170_03896007
CI01000063_03879695_03885921.mRNA mRNA downstream 493406 3879291 ~ 3886018 (-) True CI01000063_03879695_03885921
CI01000063_04471188_04479927.mRNA mRNA upstream 90246 4469900 ~ 4479927 (-) True CI01000063_04471188_04479927
CI01000063_04667829_04669237.mRNA mRNA upstream 287512 4667166 ~ 4669237 (-) True CI01000063_04667829_04669237
CI01000063_04834309_04848552.mRNA mRNA upstream 454393 4834047 ~ 4848720 (-) True CI01000063_04834309_04848552
CI01000063_05056169_05057789.mRNA mRNA upstream 676515 5056169 ~ 5057855 (-) True CI01000063_05056169_05057789
CI01000063_05070661_05081280.mRNA mRNA upstream 690769 5070423 ~ 5081280 (-) True CI01000063_05070661_05081280
TU298806 other downstream 1652889 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 2051705 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 2201088 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 2709348 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 782840 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 808749 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 870351 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 870405 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 870512 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile