RNA id: TU300516


Basic Information

Item Value
RNA id TU300516
length 259
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G264806
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 4406041 ~ 4406299 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCAAGAAAGTGCATCCATCCAACATAAACACACTCCACATGGCTCCGGGGGGTAAATAAAGGCCTTCCGTATTCAACTTATGGAAAAAGCGCAACTGACGTGACGTGTTTTTTCATAGTTGAATACGGAAGGCATAGGACATAGCGTAAGCATTTTGAACTGCGAGAGGCGTTACACTTTCTTTGTAAGGCAGAAGCTAGATATTTTACTTTATAACCTGTTAAATATTAATATTTTCCTTACACAAACGCATCGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300514 lncRNA downstream 2480 4402961 ~ 4403561 (-) True G264805
TU300515 lncRNA downstream 2506 4402946 ~ 4403535 (-) False G264805
TU300500 lncRNA downstream 3435 4401928 ~ 4402606 (-) True G264802
TU300505 lncRNA downstream 4440 4400222 ~ 4401601 (-) True G264803
TU300502 lncRNA downstream 4560 4400222 ~ 4401481 (-) False G264803
TU300566 lncRNA upstream 23085 4429384 ~ 4429729 (-) True G264854
TU300569 lncRNA upstream 24559 4430858 ~ 4431159 (-) True G264857
TU300574 lncRNA upstream 31090 4437389 ~ 4437615 (-) True G264862
TU300559 lncRNA upstream 39319 4445618 ~ 4447311 (-) True G264847
TU300578 lncRNA upstream 54237 4460536 ~ 4460769 (-) True G264866
CI01000063_04183070_04264881.mRNA mRNA downstream 141160 4182580 ~ 4264881 (-) True CI01000063_04183070_04264881
CI01000063_04101695_04159421.mRNA mRNA downstream 246620 4101402 ~ 4159421 (-) True CI01000063_04101695_04159421
CI01000063_04056574_04087071.mRNA mRNA downstream 317426 4056196 ~ 4088615 (-) True CI01000063_04056574_04087071
CI01000063_03894170_03896007.mRNA mRNA downstream 509845 3894170 ~ 3896196 (-) True CI01000063_03894170_03896007
CI01000063_03879695_03885921.mRNA mRNA downstream 520023 3879291 ~ 3886018 (-) True CI01000063_03879695_03885921
CI01000063_04471188_04479927.mRNA mRNA upstream 63601 4469900 ~ 4479927 (-) True CI01000063_04471188_04479927
CI01000063_04667829_04669237.mRNA mRNA upstream 260867 4667166 ~ 4669237 (-) True CI01000063_04667829_04669237
CI01000063_04834309_04848552.mRNA mRNA upstream 427748 4834047 ~ 4848720 (-) True CI01000063_04834309_04848552
CI01000063_05056169_05057789.mRNA mRNA upstream 649870 5056169 ~ 5057855 (-) True CI01000063_05056169_05057789
CI01000063_05070661_05081280.mRNA mRNA upstream 664124 5070423 ~ 5081280 (-) True CI01000063_05070661_05081280
TU298806 other downstream 1679506 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 2078322 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 2227705 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 2735965 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 756195 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 782104 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 843706 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 843760 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 843867 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile