Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00001366 |
| length | 1527 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 5 |
| gene id | XLOC_000866 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 58601680 ~ 58606490 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-121214-41 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. |
| ensembl_id | ENSDART00000158425 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003268 | lncRNA | upstream | 6739 | 58588220 ~ 58595767 (+) | True | XLOC_000865 |
| TCONS_00003267 | lncRNA | upstream | 14031 | 58586353 ~ 58588475 (+) | False | XLOC_000865 |
| TCONS_00003266 | lncRNA | upstream | 17374 | 58577919 ~ 58585132 (+) | True | XLOC_000864 |
| TCONS_00003265 | lncRNA | upstream | 72021 | 58526391 ~ 58530485 (+) | True | XLOC_000862 |
| TCONS_00001323 | lncRNA | upstream | 585142 | 58003615 ~ 58017364 (+) | True | XLOC_000829 |
| TCONS_00003269 | lncRNA | downstream | 40464 | 58646685 ~ 58669075 (+) | True | XLOC_000871 |
| TCONS_00002891 | lncRNA | downstream | 171832 | 58778053 ~ 58782292 (+) | True | XLOC_000874 |
| TCONS_00002892 | lncRNA | downstream | 246949 | 58853170 ~ 58854124 (+) | False | XLOC_000876 |
| TCONS_00003270 | lncRNA | downstream | 247140 | 58853361 ~ 58854377 (+) | False | XLOC_000876 |
| TCONS_00003271 | lncRNA | downstream | 247143 | 58853364 ~ 58854377 (+) | False | XLOC_000876 |
| TCONS_00001364 | mRNA | upstream | 65150 | 58535306 ~ 58537356 (+) | True | XLOC_000863 |
| TCONS_00001363 | mRNA | upstream | 75507 | 58508790 ~ 58526999 (+) | False | XLOC_000862 |
| TCONS_00001362 | mRNA | upstream | 126788 | 58470337 ~ 58475718 (+) | True | XLOC_000861 |
| TCONS_00001361 | mRNA | upstream | 127176 | 58470287 ~ 58475330 (+) | False | XLOC_000861 |
| TCONS_00001360 | mRNA | upstream | 135699 | 58461990 ~ 58466807 (+) | True | XLOC_000849 |
| TCONS_00001367 | mRNA | downstream | 2757 | 58608978 ~ 58613487 (+) | False | XLOC_000867 |
| TCONS_00001368 | mRNA | downstream | 3664 | 58609885 ~ 58613331 (+) | True | XLOC_000867 |
| TCONS_00001369 | mRNA | downstream | 7751 | 58613972 ~ 58618868 (+) | False | XLOC_000868 |
| TCONS_00001370 | mRNA | downstream | 8676 | 58614897 ~ 58618383 (+) | False | XLOC_000868 |
| TCONS_00001371 | mRNA | downstream | 8697 | 58614918 ~ 58618347 (+) | True | XLOC_000868 |
| TCONS_00001335 | other | upstream | 428917 | 58160151 ~ 58173589 (+) | True | XLOC_000837 |
| TCONS_00001304 | other | upstream | 1247473 | 57347898 ~ 57355033 (+) | False | XLOC_000813 |
| TCONS_00001233 | other | upstream | 3305255 | 55293625 ~ 55297251 (+) | False | XLOC_000739 |
| TCONS_00001221 | other | upstream | 3473927 | 55128465 ~ 55128579 (+) | True | XLOC_000733 |
| TCONS_00001186 | other | upstream | 4416350 | 54186039 ~ 54186156 (+) | True | XLOC_000710 |
| TCONS_00001394 | other | downstream | 525071 | 59131292 ~ 59131406 (+) | True | XLOC_000888 |
