RNA id: TU300756


Basic Information

Item Value
RNA id TU300756
length 281
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G265004
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5024122 ~ 5024402 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAAAGGAACACTCCACTTTTTTTGAAAATAGGCTCATTTTCCAACTCCCCTAGAGTTAAACAGTTGAGTTTTACTGTTTTCGAATCCATTCAGCCGATCTCCGGGTCTGGCGGTACCACTTTTAGCATAGCTTAGCATAGTTCATTGAATCTGATTAGACCGTTAGCATCTCGCTCAAAAATGACCAAAGAGTTTAGATATTTTTCCTATTTAAAACTTGACTCTTCTGTAGTTACATCGTGTACTAAGACTGACGGAAAATGAAAAGTTGCGATTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300749 lncRNA upstream 9536 5014349 ~ 5014586 (+) True G264997
TU300670 lncRNA upstream 151560 4856896 ~ 4872562 (+) True G264946
TU300677 lncRNA upstream 167258 4758404 ~ 4856864 (+) False G264946
TU300679 lncRNA upstream 167258 4819572 ~ 4856864 (+) False G264946
TU300668 lncRNA upstream 188257 4819572 ~ 4835865 (+) False G264946
TU300757 lncRNA downstream 2743 5027145 ~ 5027379 (+) True G265005
TU300687 lncRNA downstream 46049 5070451 ~ 5073098 (+) False G264948
TU300686 lncRNA downstream 47174 5071576 ~ 5074125 (+) False G264948
TU300691 lncRNA downstream 47174 5071576 ~ 5072864 (+) True G264948
TU300664 lncRNA downstream 60478 5084880 ~ 5085892 (+) True G264945
CI01000063_04927483_04988999.mRNA mRNA upstream 35123 4927483 ~ 4988999 (+) True CI01000063_04927483_04988999
CI01000063_04896882_04899387.mRNA mRNA upstream 124131 4895763 ~ 4899991 (+) True CI01000063_04896882_04899387
CI01000063_04878276_04890999.mRNA mRNA upstream 133103 4877614 ~ 4891019 (+) True CI01000063_04878276_04890999
CI01000063_04807641_04810737.mRNA mRNA upstream 212934 4807294 ~ 4811188 (+) True CI01000063_04807641_04810737
CI01000063_04670608_04680828.mRNA mRNA upstream 343221 4670608 ~ 4680901 (+) True CI01000063_04670608_04680828
CI01000063_05034462_05041925.mRNA mRNA downstream 10060 5034462 ~ 5043319 (+) True CI01000063_05034462_05041925
CI01000063_05083449_05083858.mRNA mRNA downstream 59047 5083449 ~ 5084210 (+) True CI01000063_05083449_05083858
CI01000063_05108936_05112439.mRNA mRNA downstream 84534 5108936 ~ 5113069 (+) True CI01000063_05108936_05112439
CI01000063_05183819_05187667.mRNA mRNA downstream 159217 5183619 ~ 5188349 (+) True CI01000063_05183819_05187667
CI01000063_05191319_05197432.mRNA mRNA downstream 166917 5191319 ~ 5197560 (+) True CI01000063_05191319_05197432
TU297890 other upstream 2309605 2713615 ~ 2714517 (+) True G262436
TU297877 other upstream 2781157 2241408 ~ 2242965 (+) True G262423
TU297621 other upstream 3879115 1143871 ~ 1145007 (+) True G262194
TU297466 other upstream 4313568 710173 ~ 710554 (+) True G262060
TU297382 other upstream 4356740 665800 ~ 667382 (+) True G261984
TU301223 other downstream 889381 5913783 ~ 5919029 (+) True G265391
TU301297 other downstream 1310876 6335278 ~ 6335601 (+) True G265462

Expression Profile