RNA id: TU301485


Basic Information

Item Value
RNA id TU301485
length 582
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G265620
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5026267 ~ 5026848 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

NNAGGCACCATGCATTTTTCTTTGTATTCCTCATCTTTGCGACGCCACGGGAAATAGTCACCCCAGTTTAGCTTTCTACTTCTTTAGATAACTGCAGTGAACTTGCCTGCCGATTTTCTTCAACCCTTCTCATCAGAAGACACTCCTGTCGAGGTGTTAACTTCCGTGGACGACCTGGACGTCTCTGTGAGATGGTTGCAGTTCCATCTTTTTTACATTTTTGTACCACTTTTGCTACAGTATTCTGACTGATAAGTAAAGCTTTGCTGATCTTCTTGTAGCCGTCACCTTTCTGGTGTAAAGAAATTATTTTCTTTCTCAGGTCTTGTGACATTTCTCTTCCATGTGGTGTCATTGCTGACAGCATGAAATGGGAAGGGGTTTTAACACCCTTTTATAGTCAACTGTCTGCTGGACACCTGTGTAATGAATAATTAGACTCACCTGTGGTTGAATTCTTGTTAAATTAGACATTTGTAGTCTAAAATTTAGCTTTGCTCCAGAGACTTTCAGCGGGGTGTACTCATTTTTGTCTCACCCTACTTTGAGTAAAACTGAAAATTTTGTTCTCTAAGTTATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301438 lncRNA downstream 35667 4976411 ~ 4990600 (-) True G265574
TU301475 lncRNA downstream 68672 4956591 ~ 4957595 (-) True G265610
TU301343 lncRNA downstream 109431 4896943 ~ 4916836 (-) True G265504
TU301356 lncRNA downstream 203505 4822126 ~ 4822762 (-) True G265517
TU300660 lncRNA downstream 282712 4743318 ~ 4743555 (-) True G264942
TU301490 lncRNA upstream 73508 5100356 ~ 5100986 (-) True G265625
TU301406 lncRNA upstream 82516 5109364 ~ 5113104 (-) False G265564
TU301410 lncRNA upstream 82516 5109364 ~ 5113104 (-) True G265564
TU301500 lncRNA upstream 98409 5125257 ~ 5125483 (-) True G265635
TU301519 lncRNA upstream 194888 5221736 ~ 5226842 (-) True G265653
CI01000063_04834309_04848552.mRNA mRNA downstream 177547 4834047 ~ 4848720 (-) True CI01000063_04834309_04848552
CI01000063_04667829_04669237.mRNA mRNA downstream 357030 4667166 ~ 4669237 (-) True CI01000063_04667829_04669237
CI01000063_04471188_04479927.mRNA mRNA downstream 546340 4469900 ~ 4479927 (-) True CI01000063_04471188_04479927
CI01000063_04183070_04264881.mRNA mRNA downstream 761386 4182580 ~ 4264881 (-) True CI01000063_04183070_04264881
CI01000063_04101695_04159421.mRNA mRNA downstream 866846 4101402 ~ 4159421 (-) True CI01000063_04101695_04159421
CI01000063_05056169_05057789.mRNA mRNA upstream 29321 5056169 ~ 5057855 (-) True CI01000063_05056169_05057789
CI01000063_05070661_05081280.mRNA mRNA upstream 43575 5070423 ~ 5081280 (-) True CI01000063_05070661_05081280
CI01000063_05085075_05095432.mRNA mRNA upstream 57420 5084268 ~ 5095527 (-) True CI01000063_05085075_05095432
CI01000063_05160162_05161742.mRNA mRNA upstream 131719 5158567 ~ 5163276 (-) False CI01000063_05160162_05161742
CI01000063_05189361_05189645.mRNA mRNA upstream 161647 5188495 ~ 5189645 (-) False CI01000063_05189361_05189645
TU298806 other downstream 2299732 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 2698548 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 2847931 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 3356191 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 135646 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 161555 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 223157 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 223211 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 223318 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile