RNA id: TU300757


Basic Information

Item Value
RNA id TU300757
length 235
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G265005
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5027145 ~ 5027379 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGGCTCCTGATCTGAACCCAATCGAACACCTATGGGGAATTCTGAAGAGACAAGTTGAGCATCACTGTCCATCCAGCATCCAGTCTCTAAAAGAGGTCATTCTTGAAGAATGGAAAAAGATAGATGTTGCAAAATGTCGCCAACTTGTTCATTCCATGCCTAGAAGACTTGGTGCTGTCATTAAAGATCATGGAGGCCATACAAAGTACTAGATGTAGTAGTTTTTGTTGTGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300756 lncRNA upstream 2743 5024122 ~ 5024402 (+) True G265004
TU300749 lncRNA upstream 12559 5014349 ~ 5014586 (+) True G264997
TU300670 lncRNA upstream 154583 4856896 ~ 4872562 (+) True G264946
TU300677 lncRNA upstream 170281 4758404 ~ 4856864 (+) False G264946
TU300687 lncRNA downstream 43072 5070451 ~ 5073098 (+) False G264948
TU300686 lncRNA downstream 44197 5071576 ~ 5074125 (+) False G264948
TU300691 lncRNA downstream 44197 5071576 ~ 5072864 (+) True G264948
TU300664 lncRNA downstream 57501 5084880 ~ 5085892 (+) True G264945
TU300795 lncRNA downstream 108512 5135891 ~ 5136247 (+) True G265040
CI01000063_04927483_04988999.mRNA mRNA upstream 38146 4927483 ~ 4988999 (+) True CI01000063_04927483_04988999
CI01000063_04896882_04899387.mRNA mRNA upstream 127154 4895763 ~ 4899991 (+) True CI01000063_04896882_04899387
CI01000063_04878276_04890999.mRNA mRNA upstream 136126 4877614 ~ 4891019 (+) True CI01000063_04878276_04890999
CI01000063_04807641_04810737.mRNA mRNA upstream 215957 4807294 ~ 4811188 (+) True CI01000063_04807641_04810737
CI01000063_04670608_04680828.mRNA mRNA upstream 346244 4670608 ~ 4680901 (+) True CI01000063_04670608_04680828
CI01000063_05034462_05041925.mRNA mRNA downstream 7083 5034462 ~ 5043319 (+) True CI01000063_05034462_05041925
CI01000063_05083449_05083858.mRNA mRNA downstream 56070 5083449 ~ 5084210 (+) True CI01000063_05083449_05083858
CI01000063_05108936_05112439.mRNA mRNA downstream 81557 5108936 ~ 5113069 (+) True CI01000063_05108936_05112439
CI01000063_05183819_05187667.mRNA mRNA downstream 156240 5183619 ~ 5188349 (+) True CI01000063_05183819_05187667
CI01000063_05191319_05197432.mRNA mRNA downstream 163940 5191319 ~ 5197560 (+) True CI01000063_05191319_05197432
TU297890 other upstream 2312628 2713615 ~ 2714517 (+) True G262436
TU297877 other upstream 2784180 2241408 ~ 2242965 (+) True G262423
TU297621 other upstream 3882138 1143871 ~ 1145007 (+) True G262194
TU297466 other upstream 4316591 710173 ~ 710554 (+) True G262060
TU297382 other upstream 4359763 665800 ~ 667382 (+) True G261984
TU301223 other downstream 886404 5913783 ~ 5919029 (+) True G265391
TU301297 other downstream 1307899 6335278 ~ 6335601 (+) True G265462

Expression Profile