RNA id: TU300691



Basic Information


Item Value
RNA id TU300691
length 742
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G264948
representative True

Chromosome Information


Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5070451 ~ 5074125 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCCGGGGAAGCCATAATGGTATGGCTCTGCTTCTAATCTGAGAAACCGCAATCTGTAGCTCCCAGTGGCTCCGGTCGCGGTCAGATCTGTACATAAACTGCAGCAGAACTCGTCTTGAATCTCCACATAGCACTGAAGTTGCACAGGGCAGGGCGCACAGCGCAGGGCTATGTGATTGGAAGGACCAAAGAAAGTCTACTCCCTTTCCAAACACCACCACTGTGGCACCCACCGCCATAATCTCCAGAATCCTGAGTCAACATATTGCTTCACAATATTTCACTCTTCCAAATCATCCATCACACTCCCAAGCAGAAGTGAAGAGAACTCCTTGCATTCTCAGTTAGCAATATACAGGAGAATCTGCACCCAGTACTGAGGCAGCTTTACACGGTTTCAGAGTTCTGCATTTCACCTTTCCAAAGATAGTTTCTCTTAAAATGATTAATTCAAAGTCTGACATCTGACGTCTTTTGTTATCCACACACACTTTGCACACCAGGTCTCTCTGGCCCAGAAATGGCAGGCGCTCTGGATTTGTAGTCAGGTAAGATAAAGACCAGGGTGCTGTGATGAAGGATGAGCTCTATCTCAGTTGTGCTGTAATGTGTTGGATTCTATGGGAGGTGCCGAATCATACAGTGTGTCCGTGTCGTGGGTCGGCTCACCGGCCAATGTGCAAGGATTGGACAATGTACCCGCGCCACAGTCACAAAAAAAACCTATCATGCCGTATAAACTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU300757 lncRNA upstream 44197 5027145 ~ 5027379 (+) True G265005
TU300756 lncRNA upstream 47174 5024122 ~ 5024402 (+) True G265004
TU300749 lncRNA upstream 56990 5014349 ~ 5014586 (+) True G264997
TU300670 lncRNA upstream 199014 4856896 ~ 4872562 (+) True G264946
TU300679 lncRNA upstream 214712 4819572 ~ 4856864 (+) False G264946
TU300664 lncRNA downstream 12016 5084880 ~ 5085892 (+) True G264945
TU300795 lncRNA downstream 63027 5135891 ~ 5136247 (+) True G265040
TU300796 lncRNA downstream 63477 5136341 ~ 5136689 (+) True G265041
TU300798 lncRNA downstream 64739 5137603 ~ 5137907 (+) True G265042
TU300809 lncRNA downstream 72634 5145498 ~ 5145762 (+) True G265049
CI01000063_05034462_05041925.mRNA mRNA upstream 28257 5034462 ~ 5043319 (+) True CI01000063_05034462_05041925
CI01000063_04927483_04988999.mRNA mRNA upstream 82577 4927483 ~ 4988999 (+) True CI01000063_04927483_04988999
CI01000063_04896882_04899387.mRNA mRNA upstream 171585 4895763 ~ 4899991 (+) True CI01000063_04896882_04899387
CI01000063_04878276_04890999.mRNA mRNA upstream 180557 4877614 ~ 4891019 (+) True CI01000063_04878276_04890999
CI01000063_04807641_04810737.mRNA mRNA upstream 260388 4807294 ~ 4811188 (+) True CI01000063_04807641_04810737
CI01000063_05083449_05083858.mRNA mRNA downstream 10585 5083449 ~ 5084210 (+) True CI01000063_05083449_05083858
CI01000063_05108936_05112439.mRNA mRNA downstream 36072 5108936 ~ 5113069 (+) True CI01000063_05108936_05112439
CI01000063_05183819_05187667.mRNA mRNA downstream 110755 5183619 ~ 5188349 (+) True CI01000063_05183819_05187667
CI01000063_05191319_05197432.mRNA mRNA downstream 118455 5191319 ~ 5197560 (+) True CI01000063_05191319_05197432
CI01000063_05223875_05227171.mRNA mRNA downstream 151011 5223875 ~ 5227171 (+) True CI01000063_05223875_05227171
TU297890 other upstream 2357059 2713615 ~ 2714517 (+) True G262436
TU297877 other upstream 2828611 2241408 ~ 2242965 (+) True G262423
TU297621 other upstream 3926569 1143871 ~ 1145007 (+) True G262194
TU297466 other upstream 4361022 710173 ~ 710554 (+) True G262060
TU297382 other upstream 4404194 665800 ~ 667382 (+) True G261984
TU301223 other downstream 840919 5913783 ~ 5919029 (+) True G265391
TU301297 other downstream 1262414 6335278 ~ 6335601 (+) True G265462

Expression Profile