RNA id: TU301490


Basic Information

Item Value
RNA id TU301490
length 631
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G265625
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5100356 ~ 5100986 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGTCTTTGTAATTTGGGCAGGAGCATTGTCTTTTAAAAAACAGCATCTGATCATTCCTCTTTAGATAACATCTTTTCATTTGTAGGAAGCAATCCATTCTGCAATATTCTCCTGTACTTCAAAGCATTAAATGACTTTTCACAGAGAAGTAGCTCACCAATACCAGCAGCTAAAAAGGCTCCCCACACAATGACACCTCTTCCTCCATGCTTCACTGTGGTAGAGATGCATTTATTATTATATTTCTCACCAGATTTTCGAAGACACTGCTCTGGAGCATCACCATGCAACTCGTGTTTCATTGTAATTCATCATTCCACAGACAACTTCCCATTTTCTGCCAAAAACTTAATTCTGTCTTTGATGTTTTTTCTGAGACAGCAATGGTTTTTTAAGTAGTGCATTTGCTTTAATTTTGCTGATGTCATAAGCAATAATCTGTGGTTAAGACAATTAAAAGCTTAGGGGCCGTTTACACAACACCATTTTCAACTAAAAAACGTAAAACTTTTTATGTTCATTTACACGACAACAGCGTTTTCAGGGCCTGAAAATGCAAACTTTTGAAAATGGGTTTCAAGGTGAAAGTTTTTGAAAACGATACCATTTTCATCTCGGTGTAAACTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301485 lncRNA downstream 73508 5026267 ~ 5026848 (-) True G265620
TU301438 lncRNA downstream 109756 4976411 ~ 4990600 (-) True G265574
TU301475 lncRNA downstream 142761 4956591 ~ 4957595 (-) True G265610
TU301343 lncRNA downstream 183520 4896943 ~ 4916836 (-) True G265504
TU301356 lncRNA downstream 277594 4822126 ~ 4822762 (-) True G265517
TU301406 lncRNA upstream 8378 5109364 ~ 5113104 (-) False G265564
TU301410 lncRNA upstream 8378 5109364 ~ 5113104 (-) True G265564
TU301500 lncRNA upstream 24271 5125257 ~ 5125483 (-) True G265635
TU301519 lncRNA upstream 120750 5221736 ~ 5226842 (-) True G265653
TU301540 lncRNA upstream 163156 5264142 ~ 5264343 (-) True G265672
CI01000063_05085075_05095432.mRNA mRNA downstream 4829 5084268 ~ 5095527 (-) True CI01000063_05085075_05095432
CI01000063_05070661_05081280.mRNA mRNA downstream 19076 5070423 ~ 5081280 (-) True CI01000063_05070661_05081280
CI01000063_05056169_05057789.mRNA mRNA downstream 42501 5056169 ~ 5057855 (-) True CI01000063_05056169_05057789
CI01000063_04834309_04848552.mRNA mRNA downstream 251636 4834047 ~ 4848720 (-) True CI01000063_04834309_04848552
CI01000063_04667829_04669237.mRNA mRNA downstream 431119 4667166 ~ 4669237 (-) True CI01000063_04667829_04669237
CI01000063_05160162_05161742.mRNA mRNA upstream 57581 5158567 ~ 5163276 (-) False CI01000063_05160162_05161742
CI01000063_05189361_05189645.mRNA mRNA upstream 87509 5188495 ~ 5189645 (-) False CI01000063_05189361_05189645
CI01000063_05198199_05217488.mRNA mRNA upstream 97180 5198166 ~ 5217644 (-) True CI01000063_05198199_05217488
CI01000063_05248902_05250362.mRNA mRNA upstream 147711 5248697 ~ 5250625 (-) True CI01000063_05248902_05250362
CI01000063_05252331_05253850.mRNA mRNA upstream 150908 5251894 ~ 5253850 (-) False CI01000063_05252331_05253850
TU298806 other downstream 2373821 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 2772637 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 2922020 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 3430280 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301418 other upstream 61508 5183279 ~ 5183287 (-) True G265567
TU301411 other upstream 87417 5190050 ~ 5190617 (-) True G265565
TU301419 other upstream 149019 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 149073 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 149180 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850

Expression Profile