RNA id: TU300795


Basic Information

Item Value
RNA id TU300795
length 357
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G265040
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5135891 ~ 5136247 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAGCCATGATCGATGCTCTAGTGCATTACTGATGATTTGCACTCAGCCAGTTAGTGGTTTTTGGACACATCCATTAATGAGCCACGTCTGTCCTCACCTCAACCACATACAAGCACAATGAGACTGGACATGGCTCTTAGCTTGATAATGTGTACACCCACAAACATACACATGCACAAATACACTTAATGCGCATACAAACTCCTAAAAGTGGGCATCGAATAAAAGCATCTTCACTAAGAGCTGTTTAGATGCAGAGAGAAGCGGGATAACTTAATTTGGTGTGATTCCACCAGAAGAATTACAGAGAAGAGCTGGGCAGGAATGAATTGTGTAAGTATTGCTACCCCTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300664 lncRNA upstream 49999 5084880 ~ 5085892 (+) True G264945
TU300686 lncRNA upstream 61766 5071576 ~ 5074125 (+) False G264948
TU300687 lncRNA upstream 62793 5070451 ~ 5073098 (+) False G264948
TU300691 lncRNA upstream 63027 5071576 ~ 5072864 (+) True G264948
TU300757 lncRNA upstream 108512 5027145 ~ 5027379 (+) True G265005
TU300796 lncRNA downstream 94 5136341 ~ 5136689 (+) True G265041
TU300798 lncRNA downstream 1356 5137603 ~ 5137907 (+) True G265042
TU300809 lncRNA downstream 9251 5145498 ~ 5145762 (+) True G265049
TU300814 lncRNA downstream 14684 5150931 ~ 5151217 (+) True G265054
TU300815 lncRNA downstream 15797 5152044 ~ 5152315 (+) True G265055
CI01000063_05108936_05112439.mRNA mRNA upstream 22822 5108936 ~ 5113069 (+) True CI01000063_05108936_05112439
CI01000063_05083449_05083858.mRNA mRNA upstream 51681 5083449 ~ 5084210 (+) True CI01000063_05083449_05083858
CI01000063_05034462_05041925.mRNA mRNA upstream 92572 5034462 ~ 5043319 (+) True CI01000063_05034462_05041925
CI01000063_04927483_04988999.mRNA mRNA upstream 146892 4927483 ~ 4988999 (+) True CI01000063_04927483_04988999
CI01000063_04896882_04899387.mRNA mRNA upstream 235900 4895763 ~ 4899991 (+) True CI01000063_04896882_04899387
CI01000063_05183819_05187667.mRNA mRNA downstream 47372 5183619 ~ 5188349 (+) True CI01000063_05183819_05187667
CI01000063_05191319_05197432.mRNA mRNA downstream 55072 5191319 ~ 5197560 (+) True CI01000063_05191319_05197432
CI01000063_05223875_05227171.mRNA mRNA downstream 87628 5223875 ~ 5227171 (+) True CI01000063_05223875_05227171
CI01000063_05271158_05276999.mRNA mRNA downstream 134911 5271158 ~ 5277105 (+) True CI01000063_05271158_05276999
CI01000063_05281800_05302429.mRNA mRNA downstream 144408 5280655 ~ 5302499 (+) True CI01000063_05281800_05302429
TU297890 other upstream 2421374 2713615 ~ 2714517 (+) True G262436
TU297877 other upstream 2892926 2241408 ~ 2242965 (+) True G262423
TU297621 other upstream 3990884 1143871 ~ 1145007 (+) True G262194
TU297466 other upstream 4425337 710173 ~ 710554 (+) True G262060
TU297382 other upstream 4468509 665800 ~ 667382 (+) True G261984
TU301223 other downstream 777536 5913783 ~ 5919029 (+) True G265391
TU301297 other downstream 1199031 6335278 ~ 6335601 (+) True G265462

Expression Profile