RNA id: TU300816


Basic Information

Item Value
RNA id TU300816
length 381
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G265056
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5152413 ~ 5152793 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAACACTCTAAATGTTTTGGTCCACATCAACCTGTCACATATAGGCTACCAATAAACAACATAAGGACAGAAGATGGGAAAAAGGTCAAAGAGTTTACTTTAATAGTAAAGATGGCATCAGAACAACATGCAGCCCTTACCTCCTAATTGCGACGGAAAAGTTGTGTCTGTCTTTTCCTATTAAACTGTACCGACACCTGCTGGACACAAAAGGAAACACACAAAATAATGAAGACTTCGAAACCACACAACTTAAACTTTTTTTTTTTTTTTTTATATGAAACAGGACAAAACATCAAAACATTAAGGTAATACAGAAACTTTAATATCGTTCCAAACCCGTTCGACTCGCAACTGAATCGTCGAAATAATGGACACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300815 lncRNA upstream 98 5152044 ~ 5152315 (+) True G265055
TU300814 lncRNA upstream 1196 5150931 ~ 5151217 (+) True G265054
TU300809 lncRNA upstream 6651 5145498 ~ 5145762 (+) True G265049
TU300798 lncRNA upstream 14506 5137603 ~ 5137907 (+) True G265042
TU300796 lncRNA upstream 15724 5136341 ~ 5136689 (+) True G265041
TU300817 lncRNA downstream 359 5153152 ~ 5153459 (+) True G265057
TU300818 lncRNA downstream 1042 5153835 ~ 5154174 (+) True G265058
TU300819 lncRNA downstream 1398 5154191 ~ 5154717 (+) True G265059
TU300804 lncRNA downstream 2336 5155129 ~ 5159416 (+) False G265046
TU300805 lncRNA downstream 2336 5155129 ~ 5159416 (+) True G265046
CI01000063_05108936_05112439.mRNA mRNA upstream 39344 5108936 ~ 5113069 (+) True CI01000063_05108936_05112439
CI01000063_05083449_05083858.mRNA mRNA upstream 68203 5083449 ~ 5084210 (+) True CI01000063_05083449_05083858
CI01000063_05034462_05041925.mRNA mRNA upstream 109094 5034462 ~ 5043319 (+) True CI01000063_05034462_05041925
CI01000063_04927483_04988999.mRNA mRNA upstream 163414 4927483 ~ 4988999 (+) True CI01000063_04927483_04988999
CI01000063_04896882_04899387.mRNA mRNA upstream 252422 4895763 ~ 4899991 (+) True CI01000063_04896882_04899387
CI01000063_05183819_05187667.mRNA mRNA downstream 30826 5183619 ~ 5188349 (+) True CI01000063_05183819_05187667
CI01000063_05191319_05197432.mRNA mRNA downstream 38526 5191319 ~ 5197560 (+) True CI01000063_05191319_05197432
CI01000063_05223875_05227171.mRNA mRNA downstream 71082 5223875 ~ 5227171 (+) True CI01000063_05223875_05227171
CI01000063_05271158_05276999.mRNA mRNA downstream 118365 5271158 ~ 5277105 (+) True CI01000063_05271158_05276999
CI01000063_05281800_05302429.mRNA mRNA downstream 127862 5280655 ~ 5302499 (+) True CI01000063_05281800_05302429
TU297890 other upstream 2437896 2713615 ~ 2714517 (+) True G262436
TU297877 other upstream 2909448 2241408 ~ 2242965 (+) True G262423
TU297621 other upstream 4007406 1143871 ~ 1145007 (+) True G262194
TU297466 other upstream 4441859 710173 ~ 710554 (+) True G262060
TU297382 other upstream 4485031 665800 ~ 667382 (+) True G261984
TU301223 other downstream 760990 5913783 ~ 5919029 (+) True G265391
TU301297 other downstream 1182485 6335278 ~ 6335601 (+) True G265462

Expression Profile