RNA id: TU300818


Basic Information

Item Value
RNA id TU300818
length 340
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G265058
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5153835 ~ 5154174 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCCCACTACATGGATGTCTCACAAAATCCAGCCAGACATGGCGTGCAGAGGAGAGAATGCAACCCGACCCTTACCCTCCCCATTTCTGTAAAAGAGACAGAGCCTGAATGATGAACTGACAACATATAGTATCACAGCCGAGGAGGAGGGAATCTCAAGGTTGGGCCCAGCAATAAGAGGCGAGTGACCTAGAACCTTTTCTATGAACTTGCAGAACAGGCTGCTTGATCCACAAGCACTATTAACCACAAGGGGGTAGAACTGAGCATTAGAGATGACCTGAAGGTAAATTAATAATATTTTTCTTTTAGCCACTACTAAGAATCTACTAAATGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300817 lncRNA upstream 376 5153152 ~ 5153459 (+) True G265057
TU300816 lncRNA upstream 1042 5152413 ~ 5152793 (+) True G265056
TU300815 lncRNA upstream 1520 5152044 ~ 5152315 (+) True G265055
TU300814 lncRNA upstream 2618 5150931 ~ 5151217 (+) True G265054
TU300809 lncRNA upstream 8073 5145498 ~ 5145762 (+) True G265049
TU300819 lncRNA downstream 17 5154191 ~ 5154717 (+) True G265059
TU300804 lncRNA downstream 955 5155129 ~ 5159416 (+) False G265046
TU300805 lncRNA downstream 955 5155129 ~ 5159416 (+) True G265046
TU300862 lncRNA downstream 153771 5307945 ~ 5308294 (+) True G265096
TU300870 lncRNA downstream 160055 5314229 ~ 5314511 (+) True G265104
CI01000063_05108936_05112439.mRNA mRNA upstream 40766 5108936 ~ 5113069 (+) True CI01000063_05108936_05112439
CI01000063_05083449_05083858.mRNA mRNA upstream 69625 5083449 ~ 5084210 (+) True CI01000063_05083449_05083858
CI01000063_05034462_05041925.mRNA mRNA upstream 110516 5034462 ~ 5043319 (+) True CI01000063_05034462_05041925
CI01000063_04927483_04988999.mRNA mRNA upstream 164836 4927483 ~ 4988999 (+) True CI01000063_04927483_04988999
CI01000063_04896882_04899387.mRNA mRNA upstream 253844 4895763 ~ 4899991 (+) True CI01000063_04896882_04899387
CI01000063_05183819_05187667.mRNA mRNA downstream 29445 5183619 ~ 5188349 (+) True CI01000063_05183819_05187667
CI01000063_05191319_05197432.mRNA mRNA downstream 37145 5191319 ~ 5197560 (+) True CI01000063_05191319_05197432
CI01000063_05223875_05227171.mRNA mRNA downstream 69701 5223875 ~ 5227171 (+) True CI01000063_05223875_05227171
CI01000063_05271158_05276999.mRNA mRNA downstream 116984 5271158 ~ 5277105 (+) True CI01000063_05271158_05276999
CI01000063_05281800_05302429.mRNA mRNA downstream 126481 5280655 ~ 5302499 (+) True CI01000063_05281800_05302429
TU297890 other upstream 2439318 2713615 ~ 2714517 (+) True G262436
TU297877 other upstream 2910870 2241408 ~ 2242965 (+) True G262423
TU297621 other upstream 4008828 1143871 ~ 1145007 (+) True G262194
TU297466 other upstream 4443281 710173 ~ 710554 (+) True G262060
TU297382 other upstream 4486453 665800 ~ 667382 (+) True G261984
TU301223 other downstream 759609 5913783 ~ 5919029 (+) True G265391
TU301297 other downstream 1181104 6335278 ~ 6335601 (+) True G265462

Expression Profile