RNA id: TU300805


Basic Information

Item Value
RNA id TU300805
length 4017
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G265046
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5155129 ~ 5159416 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACACATACAACACTTTTATTTTTGAATATTAAGACAATGAAGCATAAGCCAAGAGCACCAAGAGTGACAGCTACTGGTGAAAGAGGGGCATGTGGAGCCCCCCCACCCCCAAAAACAGCAAACTGTAACCCAAAGTCAAACAAAATAATACAACAGAGCAACTTAGTAACAGCCTGGGAGTAGGGACCATTAACTGTACATAAGAGAGAATGAAGGAAAGGTAAGATAAAGGACATTGAGTGCGAGTAATTACATTGTACAGTACAAACCTTGGGCAGTGTATAAAAAAAAAATTAAAACATATAAGATGGTGAGAGACAGTGATATCCACCTCACTCCACAGAACCCATGGTGTATGTTTCAGCAAGTGTTTTGAGGGGCTAGTCCCAAGGGTCCAATCAGAAATACGGAGGCAGGTCATGGGTGGCGCAATAGTCATCTTAAGTGTAATCATTGTCAAGTGTTGTCATCATGGCACCCAGTTCTAAACCTCACCTTCAGCCCATTCGAACCTTAAGGTAACACAGTTACCATGGTGATGCTTGTGACTTATTCAATCTGAAACAGATCCAACAAAATTTAATACAAGTCAGTCTTTTATTTCTGTCTAAACATTGCTGAACACAACCTCCCTTTGTGTACAGAAACGTATCAAATAATATTGAACAGAAAACTTTTCCTGTTGGTAATGTGCAAGGCTCTGCACATAAAATGGCTTGCAACATTCTCTCTAACATTTTAACATAGTATTGTTATTTTCTAGAAGAAATTCCGGCTAGGCTATTGACAGGTGTATATCTTGTGAGGACACACACTGCCAATCTAAGCCTCAGTATCATATCTGAGAATCATGACCTTTCATCTTGCTTTGTGGTGATCTGTGATGAAGTCTCCATCTATGCACATTTTTATGTGCTGACCGATCACTTGAGTCAATCATACACCTGATGGTGTATAAATATTTAATAATCACATTTAACTATACTGTTCTGGTGAACAGATAAACAGCAAATCCAGACCTTAACAACTTGGGATACTAAAATATGGGGGAATAAAACCTTTTTGTTCACAAATTCTTCGAACTTCCTTTCAGCACACAATAACACACTTGTATAAAAAACATAACTAATGAATACGGTTATGTCGCATTTTGCTTTAATTTGCTGCAGGATGCAAATTAACCAGACTGGGGACAACTGAATTTGGGTTTCTTGAGGAAAGGGGGAAGTATTTACGAAAAGGCACTTCTGAAAGTTAATCCATAGAGTAAGCCAATGAGCACCTTTAGGGTCTAAAACTAGGCCTTTTTTTTAAACTTCAAAATGTTTATTTTGGAACATTTTAGCAATAATTTTGTGAGAATCACATTGACGATTTTTCACCAAACTTAAACCTTTGGTCACATTTATCTATAGTTTCTCTCACACACTTTTATGACACACTGCACCAACATCCTATGTTGTCGTGATGTGAATAGAATGATTCTAACCTGAAGACAATTTCAATGGAGAACTATTTCTCAGACAATTCACATCAGTTTTCACATGGGTCACCATTATAGCTAAGCCCAAGAACATTATTGCATTTCTTTACAGTTACTAATAATAAAAATATTTTATTTTAAAAATCTGTATATTATATTATATATATATATATATTATATATATATATATATATATATATATATATTAATCCATTATGCCTTTAGTAAAACTAGGGAAAACTAGGGGGGAGAGAAGAGGCATCATGATCCTCTGCTCTGCCCCCATCTGACTGAGCAAATGCTCCACCCCTGATGAAAATTGGTACACACAGGTATAGGTAGGTACACGTCAAGTTTCACGGGTTAGTGCAGTGAGGAGTGTCTGGAGCAAAGCCAAGCATGACACTTTTACAGGTGAGCAGTAAGCAGGACAGCTGGCCCCTTCAGATGCCATGTCAACCTGAAACCTGCTTCACAACCATCATACAAGCCGAGGCTCTGTCTAAATTGCACTAATTTCACCCACACCCTACAGAGAGAGAGAGGTGGTGAGGGAGATCAAACCACACAGTGGTTGCAGTGATGTCACCCCAAAGTTCTCTCCTCATGTCTTTGAATTCTTCCCAGGATGATCCTGACATCCTTTCTTGTGCAAGGAAAAAGACTCGACAGGATAACGTGCAGGAAGACGACTTTAAATGCATCAGGATAGACTGTGGATTAATGTTGCCCGGGAGGAGCGTATAACAAAACTTTTCAAGTCAGCAAAAGTCTCTTACGGTTGACTGAGGTCAGGGTCAGTGCAACACACACATACACACACACAAGCACACAAAGCTGGTTATAGTTGCACTGTATACCCTGCTGTTTAGGTGTTGTGAGCCTGAGCTTAGCATTTGGCAGTTCTACCTGATCGCATCAATTGAAAACAAGTCAGAAAGATGTAAGAATCAATAGTAATATCCCTAGCAGTATTCAAAACACATCACACATCAGCACCAGGCCCATGAAAAGGATGTCTCACGGTGCCACTGACACTCAGTGTAGGAAAGGTCATTGGAAAACATGTCTTTTCCAATTAGACCACTGTTAGTAACAAATCCACTGAATGCACCATATGATGAACTTAATGGTTTAGATGTATGCACACTGCTTAAGTCAATGGTTCCCAATCTCGGTCCTGGCACCCCCGCCCCCCAACCCCGCACATTTTGTATGTCTCTCTTCTATGGGGAGGGGGCACCAGGACCAGGAATCGCTGGCTTAAATGTGATTTAATCTTTTTTGAGACTAAACAAATGGGGTAAACAGCACAAGAGTTATACATATGTCCTTTTCTCTTAACTTCTATTTGAAATCCCTCATTGTAGTTACAGAAATTCAAGTGTGGATGTGACTGATTCTAAAGTGATCAATAAGCTGGTCTTGGCCTACTCTTAGCCAACAATGTGATTATACTCCATTTATTTAAATTCCAAACCTTCCTCCTAGTTGCTTAACAAAAGAATCTGCTAAACTTAAATGTACTAAAGATTATTCATCAATTATTAAAATCATTTAAATTAAGCAGGTCTCATAAAACAAGCCACCTTGACCCAATTCCAGTGGCACTGATGGGGTCACCTCAAAACTTACTATTTCCTGTTTAGAGCAATGTGGGTTAGACAAAGTGAGTGTAGAGTGTTTATTCCTGTATATAGGAGGGTGTTTATGCCTAACAACAATGGTCCCAGTGTAGCAGGTTTATGTATTGCCTTTGCTGCACCCACTAACATAAGCACAGTTAAGTTAAAGTGCTCTTAATCAGTGCCCAAATTCAAGGGCACTAATAGACCATTCACAACAATACAAAAAAGACGATACAGAATTAGTCACCCCCCCTGTGCAATTAGTGGTAGGAATTAATGATTACAAAACATATTGACAGCAACAGAACGCAGAGTGTGAGTAACAATGTTTTTTGAAAACCAAGCGCTCTCACACACATCATCACCACATCATGTTGTCGTCCTTAATCGCTTCCCAGAAGCGTAAGGAAGCAGAACATTACAGAGCCCTTCTCTCCACTGCAACGCATTCCCAAAAGCTGTCTAGATACAGTTTAAGGTCAATCCATCTTTCATGGACCTCTCTGCCTCATTCTCTATGAGCAGGGTAAAAGCCTTTCTATTTCCTGCTCCAGAATGCCTCTTCGAACCATGGAATGAGCACAGAATGTTACCATGGGAACCACTGACAGAGCACCATGAAAGCTAAAGATGATGAAAGAAGCTGGAAAAAGCAATATTTGAAAATCACCCTTCATTTCCCCTCCCCTACTTTGAATAAACACTAACAATGCAATTTTAATGCAAGGGAATTAAGGGCAGGCAGGGAGGTGAACTGAAATGGCATAAACCTCACAGTCAAGCAGTGAAAAATATCTGCAGATCCCCCTTAGGGCAAAGCCATGGGAAGTAGAGTTGTCAAATGTACCGACTTCGGTACCAATCGGTACCGAAATTTTAAAAATGTGAAGCTTTGAGCGGATTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300819 lncRNA upstream 412 5154191 ~ 5154717 (+) True G265059
TU300818 lncRNA upstream 955 5153835 ~ 5154174 (+) True G265058
TU300817 lncRNA upstream 1670 5153152 ~ 5153459 (+) True G265057
TU300816 lncRNA upstream 2336 5152413 ~ 5152793 (+) True G265056
TU300815 lncRNA upstream 2814 5152044 ~ 5152315 (+) True G265055
TU300862 lncRNA downstream 148529 5307945 ~ 5308294 (+) True G265096
TU300870 lncRNA downstream 154813 5314229 ~ 5314511 (+) True G265104
TU300875 lncRNA downstream 160216 5319632 ~ 5319863 (+) True G265109
TU300880 lncRNA downstream 166587 5326003 ~ 5326336 (+) True G265114
TU300892 lncRNA downstream 182798 5342214 ~ 5342446 (+) True G265126
CI01000063_05108936_05112439.mRNA mRNA upstream 42060 5108936 ~ 5113069 (+) True CI01000063_05108936_05112439
CI01000063_05083449_05083858.mRNA mRNA upstream 70919 5083449 ~ 5084210 (+) True CI01000063_05083449_05083858
CI01000063_05034462_05041925.mRNA mRNA upstream 111810 5034462 ~ 5043319 (+) True CI01000063_05034462_05041925
CI01000063_04927483_04988999.mRNA mRNA upstream 166130 4927483 ~ 4988999 (+) True CI01000063_04927483_04988999
CI01000063_04896882_04899387.mRNA mRNA upstream 255138 4895763 ~ 4899991 (+) True CI01000063_04896882_04899387
CI01000063_05183819_05187667.mRNA mRNA downstream 24203 5183619 ~ 5188349 (+) True CI01000063_05183819_05187667
CI01000063_05191319_05197432.mRNA mRNA downstream 31903 5191319 ~ 5197560 (+) True CI01000063_05191319_05197432
CI01000063_05223875_05227171.mRNA mRNA downstream 64459 5223875 ~ 5227171 (+) True CI01000063_05223875_05227171
CI01000063_05271158_05276999.mRNA mRNA downstream 111742 5271158 ~ 5277105 (+) True CI01000063_05271158_05276999
CI01000063_05281800_05302429.mRNA mRNA downstream 121239 5280655 ~ 5302499 (+) True CI01000063_05281800_05302429
TU297890 other upstream 2440612 2713615 ~ 2714517 (+) True G262436
TU297877 other upstream 2912164 2241408 ~ 2242965 (+) True G262423
TU297621 other upstream 4010122 1143871 ~ 1145007 (+) True G262194
TU297466 other upstream 4444575 710173 ~ 710554 (+) True G262060
TU297382 other upstream 4487747 665800 ~ 667382 (+) True G261984
TU301223 other downstream 754367 5913783 ~ 5919029 (+) True G265391
TU301297 other downstream 1175862 6335278 ~ 6335601 (+) True G265462

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU267544 True 1428 lncRNA 0.44 2 NC_048567.1 20914147 ~ 20915906 (-)
rainbow trout (Oncorhynchus mykiss) TU2100877 True 2325 lncRNA 0.43 1 NC_048587.1 15750260 ~ 15752584 (+)
eurasian perch (Perca fluviatilis) TU267544 True 627 TUCP 0.43 1 NC_053130.1 26663159 ~ 26663785 (+)