RNA id: TU301519


Basic Information

Item Value
RNA id TU301519
length 248
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G265653
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5221736 ~ 5226842 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAATTAAGAGTCTCCAGCAGAAGAGTATGTAGTCATGGTTTTGTTCCAGTTCCCTGTGCCGTTTGTTTCGTTCCTGATATTGTTTAAATTGTCTCTGCTTCACTTCACTGGATTTCTCATTGGACTGTCAGCAGATGACGCTCAGCCCGTTGTAGTCTCCTCGCTTCCAAGGCCTGCCATTCACCATCTTCTAGCGACAACTCTGACCATCTTGCTTAAATATTTCTCTGTTTCTAAATAAACTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301500 lncRNA downstream 96253 5125257 ~ 5125483 (-) True G265635
TU301406 lncRNA downstream 108632 5109364 ~ 5113104 (-) False G265564
TU301410 lncRNA downstream 108632 5109364 ~ 5113104 (-) True G265564
TU301490 lncRNA downstream 120750 5100356 ~ 5100986 (-) True G265625
TU301485 lncRNA downstream 194888 5026267 ~ 5026848 (-) True G265620
TU301540 lncRNA upstream 37300 5264142 ~ 5264343 (-) True G265672
TU301532 lncRNA upstream 37650 5264492 ~ 5281847 (-) True G265665
TU301566 lncRNA upstream 99290 5326132 ~ 5329568 (-) True G265693
TU301578 lncRNA upstream 123024 5349866 ~ 5350103 (-) True G265705
TU301594 lncRNA upstream 133916 5360758 ~ 5362072 (-) False G265709
CI01000063_05198199_05217488.mRNA mRNA downstream 4092 5198166 ~ 5217644 (-) True CI01000063_05198199_05217488
CI01000063_05189361_05189645.mRNA mRNA downstream 32091 5188495 ~ 5189645 (-) False CI01000063_05189361_05189645
CI01000063_05160162_05161742.mRNA mRNA downstream 58460 5158567 ~ 5163276 (-) False CI01000063_05160162_05161742
CI01000063_05085075_05095432.mRNA mRNA downstream 126209 5084268 ~ 5095527 (-) True CI01000063_05085075_05095432
CI01000063_05070661_05081280.mRNA mRNA downstream 140456 5070423 ~ 5081280 (-) True CI01000063_05070661_05081280
CI01000063_05248902_05250362.mRNA mRNA upstream 21855 5248697 ~ 5250625 (-) True CI01000063_05248902_05250362
CI01000063_05252331_05253850.mRNA mRNA upstream 25052 5251894 ~ 5253850 (-) False CI01000063_05252331_05253850
CI01000063_05257128_05262520.mRNA mRNA upstream 30116 5256958 ~ 5263331 (-) True CI01000063_05257128_05262520
CI01000063_05304502_05306803.mRNA mRNA upstream 77597 5304439 ~ 5306803 (-) True CI01000063_05304502_05306803
CI01000063_05353701_05355458.mRNA mRNA upstream 125916 5352758 ~ 5356284 (-) True CI01000063_05353701_05355458
TU301411 other downstream 31119 5190050 ~ 5190617 (-) True G265565
TU298806 other downstream 2495201 2725759 ~ 2726535 (-) True CI01000063_02725759_02726399
TU298801 other downstream 2894017 2325112 ~ 2327719 (-) True G263230
TU298810 other downstream 3043400 2176439 ~ 2177485 (-) True G263239
TU298670 other downstream 3551660 1669411 ~ 1670076 (-) True CI01000063_01669384_01670016
TU301419 other upstream 23163 5250005 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301420 other upstream 23217 5250059 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301421 other upstream 23324 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301417 other upstream 23993 5250835 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301422 other upstream 23993 5250835 ~ 5253940 (-) False CI01000063_05252331_05253850

Expression Profile