RNA id: TU300862


Basic Information

Item Value
RNA id TU300862
length 350
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G265096
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5307945 ~ 5308294 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATCGGTTAGCGCGCGGTACTTATACAGCAGTACAAAGCAGAGCAATGCCGAGGTTGTGAGTTCGAGCCTCACCTGGAGCAGAGTTTTGCACGATTAAAAAATAGGCTGAGTCTCTGCTCAACGCGTAATAACGATGGTGGACAGTTTCACATGGTCACTTATCTAAGCATATGTCGAAAAAAGATCTCGTGTGCCATAACTCGCAGTGCTCTGTTATTGAGCAGTAAATGTGTAGACATTCAAAGGCAGTGCGTTGTGTGTGAACAAACAAGACGATTAGGAAGTAGGCTACAATGTATTTGGCGTTAATGGCAGGAAGAAGCCTCTAAGGGGCAGTATTGACTTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300804 lncRNA upstream 148529 5155129 ~ 5159416 (+) False G265046
TU300805 lncRNA upstream 148529 5155129 ~ 5159416 (+) True G265046
TU300819 lncRNA upstream 153228 5154191 ~ 5154717 (+) True G265059
TU300818 lncRNA upstream 153771 5153835 ~ 5154174 (+) True G265058
TU300817 lncRNA upstream 154486 5153152 ~ 5153459 (+) True G265057
TU300870 lncRNA downstream 5935 5314229 ~ 5314511 (+) True G265104
TU300875 lncRNA downstream 11338 5319632 ~ 5319863 (+) True G265109
TU300880 lncRNA downstream 17709 5326003 ~ 5326336 (+) True G265114
TU300892 lncRNA downstream 33920 5342214 ~ 5342446 (+) True G265126
TU300898 lncRNA downstream 41467 5349761 ~ 5349978 (+) True G265132
CI01000063_05281800_05302429.mRNA mRNA upstream 5446 5280655 ~ 5302499 (+) True CI01000063_05281800_05302429
CI01000063_05271158_05276999.mRNA mRNA upstream 30840 5271158 ~ 5277105 (+) True CI01000063_05271158_05276999
CI01000063_05223875_05227171.mRNA mRNA upstream 80774 5223875 ~ 5227171 (+) True CI01000063_05223875_05227171
CI01000063_05191319_05197432.mRNA mRNA upstream 110385 5191319 ~ 5197560 (+) True CI01000063_05191319_05197432
CI01000063_05183819_05187667.mRNA mRNA upstream 119596 5183619 ~ 5188349 (+) True CI01000063_05183819_05187667
CI01000063_05400578_05406105.mRNA mRNA downstream 92284 5400578 ~ 5406277 (+) True CI01000063_05400578_05406105
CI01000063_05466326_05468126.mRNA mRNA downstream 157758 5466052 ~ 5469282 (+) True CI01000063_05466326_05468126
CI01000063_05490285_05556254.mRNA mRNA downstream 181991 5490285 ~ 5556462 (+) True CI01000063_05490285_05556254
CI01000063_05563124_05584474.mRNA mRNA downstream 254830 5563124 ~ 5585104 (+) True CI01000063_05563124_05584474
CI01000063_05597755_05613489.mRNA mRNA downstream 289030 5597324 ~ 5614646 (+) False CI01000063_05597755_05613489
TU297890 other upstream 2593428 2713615 ~ 2714517 (+) True G262436
TU297877 other upstream 3064980 2241408 ~ 2242965 (+) True G262423
TU297621 other upstream 4162938 1143871 ~ 1145007 (+) True G262194
TU297466 other upstream 4597391 710173 ~ 710554 (+) True G262060
TU297382 other upstream 4640563 665800 ~ 667382 (+) True G261984
TU301223 other downstream 605489 5913783 ~ 5919029 (+) True G265391
TU301297 other downstream 1026984 6335278 ~ 6335601 (+) True G265462

Expression Profile