RNA id: TU300899


Basic Information

Item Value
RNA id TU300899
length 408
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G265133
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5350506 ~ 5350913 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTTTTGAGGTAGAAACAGGCTTCCAGCAGGCAAACATCACCACATGAATTCTGTAGAGTGAACAGGTTGTGCCATTGTTCTGTGCTGTAGTATTTTGATTCAAATCCCAGATGGGCCTCTCATTTCCTTTAGTTTAGACCCCTACTGAGTGCGTTGCTCTTTAAGGGGTCTTTGAATTCATTGTTTTGCACTGTGGGTACTGTGTGACATGGCAGATTCATCATGCTTGACGGTTTATTTCTGTGTCCCTGATTCTATTATGCCAGTGAATCCATCCACTGTAGAGATTTCCTGTCCCTTCGAGTCCATATGGTGGAGTTTGTCTCAATCCAAGCATCACTATTGCTCCATTGGAATCTAGCCCATCTTGGAGGAAACTAAATCAAGGGGGGGGCGATATCCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300898 lncRNA upstream 528 5349761 ~ 5349978 (+) True G265132
TU300892 lncRNA upstream 8060 5342214 ~ 5342446 (+) True G265126
TU300880 lncRNA upstream 24170 5326003 ~ 5326336 (+) True G265114
TU300875 lncRNA upstream 30643 5319632 ~ 5319863 (+) True G265109
TU300870 lncRNA upstream 35995 5314229 ~ 5314511 (+) True G265104
TU300860 lncRNA downstream 10021 5360934 ~ 5367266 (+) True G265094
TU300907 lncRNA downstream 31278 5382191 ~ 5382479 (+) True G265141
TU300908 lncRNA downstream 31794 5382707 ~ 5382924 (+) True G265142
TU300942 lncRNA downstream 84486 5435399 ~ 5435640 (+) True G265173
TU300971 lncRNA downstream 139664 5490577 ~ 5490806 (+) True G265198
CI01000063_05281800_05302429.mRNA mRNA upstream 48007 5280655 ~ 5302499 (+) True CI01000063_05281800_05302429
CI01000063_05271158_05276999.mRNA mRNA upstream 73401 5271158 ~ 5277105 (+) True CI01000063_05271158_05276999
CI01000063_05223875_05227171.mRNA mRNA upstream 123335 5223875 ~ 5227171 (+) True CI01000063_05223875_05227171
CI01000063_05191319_05197432.mRNA mRNA upstream 152946 5191319 ~ 5197560 (+) True CI01000063_05191319_05197432
CI01000063_05183819_05187667.mRNA mRNA upstream 162157 5183619 ~ 5188349 (+) True CI01000063_05183819_05187667
CI01000063_05400578_05406105.mRNA mRNA downstream 49665 5400578 ~ 5406277 (+) True CI01000063_05400578_05406105
CI01000063_05466326_05468126.mRNA mRNA downstream 115139 5466052 ~ 5469282 (+) True CI01000063_05466326_05468126
CI01000063_05490285_05556254.mRNA mRNA downstream 139372 5490285 ~ 5556462 (+) True CI01000063_05490285_05556254
CI01000063_05563124_05584474.mRNA mRNA downstream 212211 5563124 ~ 5585104 (+) True CI01000063_05563124_05584474
CI01000063_05597755_05613489.mRNA mRNA downstream 246411 5597324 ~ 5614646 (+) False CI01000063_05597755_05613489
TU297890 other upstream 2635989 2713615 ~ 2714517 (+) True G262436
TU297877 other upstream 3107541 2241408 ~ 2242965 (+) True G262423
TU297621 other upstream 4205499 1143871 ~ 1145007 (+) True G262194
TU297466 other upstream 4639952 710173 ~ 710554 (+) True G262060
TU297382 other upstream 4683124 665800 ~ 667382 (+) True G261984
TU301223 other downstream 562870 5913783 ~ 5919029 (+) True G265391
TU301297 other downstream 984365 6335278 ~ 6335601 (+) True G265462

Expression Profile