Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU301588 |
| length | 3224 |
| lncRNA type | inter_gene |
| GC content | 0.33 |
| exon number | 3 |
| gene id | G265709 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000063 |
| NCBI id | null |
| chromosome length | 7808773 |
| location | 5360758 ~ 5365398 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU301578 | lncRNA | downstream | 10824 | 5349866 ~ 5350103 (-) | True | G265705 |
| TU301566 | lncRNA | downstream | 31359 | 5326132 ~ 5329568 (-) | True | G265693 |
| TU301532 | lncRNA | downstream | 79080 | 5264492 ~ 5281847 (-) | True | G265665 |
| TU301540 | lncRNA | downstream | 96584 | 5264142 ~ 5264343 (-) | True | G265672 |
| TU301519 | lncRNA | downstream | 134085 | 5221736 ~ 5226842 (-) | True | G265653 |
| TU301601 | lncRNA | upstream | 11346 | 5376744 ~ 5376976 (-) | True | G265714 |
| TU301619 | lncRNA | upstream | 48029 | 5413427 ~ 5413867 (-) | True | G265732 |
| TU301620 | lncRNA | upstream | 49032 | 5414430 ~ 5414668 (-) | True | G265733 |
| TU301629 | lncRNA | upstream | 83694 | 5449092 ~ 5449378 (-) | True | G265742 |
| TU301687 | lncRNA | upstream | 194133 | 5559531 ~ 5566376 (-) | True | G265793 |
| CI01000063_05353701_05355458.mRNA | mRNA | downstream | 4643 | 5352758 ~ 5356284 (-) | True | CI01000063_05353701_05355458 |
| CI01000063_05304502_05306803.mRNA | mRNA | downstream | 54124 | 5304439 ~ 5306803 (-) | True | CI01000063_05304502_05306803 |
| CI01000063_05257128_05262520.mRNA | mRNA | downstream | 97596 | 5256958 ~ 5263331 (-) | True | CI01000063_05257128_05262520 |
| CI01000063_05252331_05253850.mRNA | mRNA | downstream | 107077 | 5251894 ~ 5253850 (-) | False | CI01000063_05252331_05253850 |
| CI01000063_05248902_05250362.mRNA | mRNA | downstream | 110302 | 5248697 ~ 5250625 (-) | True | CI01000063_05248902_05250362 |
| CI01000063_05473346_05474995.mRNA | mRNA | upstream | 107940 | 5473338 ~ 5475757 (-) | True | CI01000063_05473346_05474995 |
| CI01000063_05616519_05617045.mRNA | mRNA | upstream | 250408 | 5615806 ~ 5617073 (-) | False | CI01000063_05616519_05617045 |
| CI01000063_05627849_05635031.mRNA | mRNA | upstream | 262360 | 5627758 ~ 5635031 (-) | True | CI01000063_05627849_05635031 |
| CI01000063_05652987_05657351.mRNA | mRNA | upstream | 286878 | 5652276 ~ 5657351 (-) | True | CI01000063_05652987_05657351 |
| CI01000063_05689441_05689773.mRNA | mRNA | upstream | 322905 | 5688303 ~ 5689881 (-) | True | CI01000063_05689441_05689773 |
| TU301422 | other | downstream | 106987 | 5250835 ~ 5253940 (-) | False | CI01000063_05252331_05253850 |
| TU301419 | other | downstream | 107116 | 5250005 ~ 5253811 (-) | False | CI01000063_05252331_05253850 |
| TU301675 | other | upstream | 181303 | 5546701 ~ 5546719 (-) | True | G265781 |
| TU301878 | other | upstream | 922760 | 6288158 ~ 6290946 (-) | True | G265976 |
| TU302824 | other | upstream | 1924097 | 7289495 ~ 7290013 (-) | False | G266797 |
| TU302823 | other | upstream | 1924330 | 7289728 ~ 7290013 (-) | False | G266797 |
| TU302826 | other | upstream | 1924330 | 7289728 ~ 7290224 (-) | True | G266797 |
