RNA id: TU301026


Basic Information

Item Value
RNA id TU301026
length 329
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G265252
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5717620 ~ 5717948 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTAGTGATGGGCGATTAAAAAAAAACTGCTTAATGACGCTTCGAAGATTTACGAATCTTTTGTTTCAAATCAGTGGTTCGGAGTGTGTATCAAACTGCCAAAGTCACGTGATTTCAGTAAATGATGCTTTGTTACCTCATAAGTGTTTCAGAATTTCAATCGTTCACCACTGGGGGGTGTGACTTTGATACGCGCTCCGAACCACTGATTCGAAAAAAAAATTCTTATAAATTCGAAGCTTCATGAAACAGTGTTTTGAAATCACCCATCACTAGATATTGTTGAATAAAGTCATTATTTTGTTTTGTTTTTTGGCACATAAAAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300922 lncRNA upstream 4704 5690216 ~ 5712916 (+) True G265153
TU301020 lncRNA upstream 10738 5705093 ~ 5706882 (+) True G265246
TU300925 lncRNA upstream 28046 5668902 ~ 5689574 (+) True G265156
TU300917 lncRNA upstream 102966 5608129 ~ 5609833 (+) False G265149
TU300918 lncRNA upstream 102966 5608129 ~ 5609834 (+) True G265149
TU301029 lncRNA downstream 2183 5720131 ~ 5720622 (+) True G265253
TU301031 lncRNA downstream 5198 5723146 ~ 5723354 (+) True G265254
TU301032 lncRNA downstream 6440 5724388 ~ 5724643 (+) True G265255
TU301034 lncRNA downstream 11646 5729594 ~ 5729833 (+) True G265257
TU301038 lncRNA downstream 31062 5749010 ~ 5749214 (+) True G265261
CI01000063_05673923_05678546.mRNA mRNA upstream 38895 5673829 ~ 5678725 (+) True CI01000063_05673923_05678546
CI01000063_05639341_05650366.mRNA mRNA upstream 66938 5639290 ~ 5650682 (+) True CI01000063_05639341_05650366
CI01000063_05597755_05613489.mRNA mRNA upstream 102974 5597324 ~ 5614646 (+) False CI01000063_05597755_05613489
CI01000063_05563124_05584474.mRNA mRNA upstream 132516 5563124 ~ 5585104 (+) True CI01000063_05563124_05584474
CI01000063_05490285_05556254.mRNA mRNA upstream 161158 5490285 ~ 5556462 (+) True CI01000063_05490285_05556254
CI01000063_05894405_05894580.mRNA mRNA downstream 176457 5894405 ~ 5894677 (+) True CI01000063_05894405_05894580
CI01000063_05922194_05935361.mRNA mRNA downstream 204246 5922194 ~ 5936249 (+) True CI01000063_05922194_05935361
CI01000063_05946534_05948489.mRNA mRNA downstream 228586 5946534 ~ 5948532 (+) True CI01000063_05946534_05948489
CI01000063_05954897_05957678.mRNA mRNA downstream 236949 5954897 ~ 5957753 (+) True CI01000063_05954897_05957678
CI01000063_05973598_05981144.mRNA mRNA downstream 255650 5973598 ~ 5981144 (+) True CI01000063_05973598_05981144
TU297890 other upstream 3003103 2713615 ~ 2714517 (+) True G262436
TU297877 other upstream 3474655 2241408 ~ 2242965 (+) True G262423
TU297621 other upstream 4572613 1143871 ~ 1145007 (+) True G262194
TU297466 other upstream 5007066 710173 ~ 710554 (+) True G262060
TU297382 other upstream 5050238 665800 ~ 667382 (+) True G261984
TU301223 other downstream 195835 5913783 ~ 5919029 (+) True G265391
TU301297 other downstream 617330 6335278 ~ 6335601 (+) True G265462

Expression Profile