RNA id: TU301912


Basic Information

Item Value
RNA id TU301912
length 226
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G266006
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 6259466 ~ 6259691 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATTGGCTCCATAAGCTCAGCTGCTGCTTTCTATTTCCACAGAATGACCTTGGTGGGTGCATGGGGTGTAGAAGGGGATAACACAGGGGCTCATGATTTTTGTGAGTAGCCTATCATATCAAAAGCCAGTTAAACTCAATTTATCCACACTTTCTGTTACATTAATATAGTTACATCACTTCTGGAAGCATTTTAAATACTTTAAAGAACTACTGCAGAAAGAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301911 lncRNA downstream 69 6259195 ~ 6259397 (-) True G266005
TU301908 lncRNA downstream 2751 6255577 ~ 6256715 (-) True G266003
TU301907 lncRNA downstream 4243 6255024 ~ 6255223 (-) True G266002
TU301862 lncRNA downstream 24087 6202965 ~ 6235379 (-) True G265960
TU301670 lncRNA downstream 70802 6185934 ~ 6188664 (-) True G265776
TU301881 lncRNA upstream 23367 6283058 ~ 6283846 (-) False G265976
TU301890 lncRNA upstream 44792 6304483 ~ 6304949 (-) True G265985
TU301922 lncRNA upstream 59870 6319561 ~ 6319837 (-) True G266016
TU301923 lncRNA upstream 60547 6320238 ~ 6320628 (-) True G266017
TU301924 lncRNA upstream 61208 6320899 ~ 6321186 (-) True G266018
CI01000063_06110909_06118565.mRNA mRNA downstream 139547 6110909 ~ 6119919 (-) True CI01000063_06110909_06118565
CI01000063_06018383_06022776.mRNA mRNA downstream 235979 6018083 ~ 6023487 (-) True CI01000063_06018383_06022776
CI01000063_06011344_06017382.mRNA mRNA downstream 242084 6010663 ~ 6017382 (-) True CI01000063_06011344_06017382
CI01000063_05992697_06005239.mRNA mRNA downstream 254107 5992579 ~ 6005359 (-) True CI01000063_05992697_06005239
CI01000063_05983940_05990611.mRNA mRNA downstream 268855 5983455 ~ 5990611 (-) True CI01000063_05983940_05990611
CI01000063_06271330_06273137.mRNA mRNA upstream 11072 6270763 ~ 6273137 (-) True CI01000063_06271330_06273137
CI01000063_06291489_06291799.mRNA mRNA upstream 31523 6291214 ~ 6291799 (-) True CI01000063_06291489_06291799
CI01000063_06332215_06332433.mRNA mRNA upstream 72458 6332149 ~ 6332433 (-) True CI01000063_06332215_06332433
CI01000063_06404520_06407506.mRNA mRNA upstream 144133 6403824 ~ 6407676 (-) True CI01000063_06404520_06407506
CI01000063_06652744_06663333.mRNA mRNA upstream 392445 6652136 ~ 6663590 (-) True CI01000063_06652744_06663333
TU301675 other downstream 642354 5546701 ~ 5546719 (-) True G265781
TU301422 other downstream 1005526 5250835 ~ 5253940 (-) False CI01000063_05252331_05253850
TU301421 other downstream 1005655 5250166 ~ 5253811 (-) False CI01000063_05252331_05253850
TU301878 other upstream 28467 6288158 ~ 6290946 (-) True G265976
TU302824 other upstream 1029804 7289495 ~ 7290013 (-) False G266797
TU302823 other upstream 1030037 7289728 ~ 7290013 (-) False G266797
TU302826 other upstream 1030037 7289728 ~ 7290224 (-) True G266797
TU302679 other upstream 1179394 7439085 ~ 7441435 (-) True G266660

Expression Profile