RNA id: TU301923


Basic Information

Item Value
RNA id TU301923
length 391
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G266017
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 6320238 ~ 6320628 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGCAGTGCTGGCAGTCAGCTCACAACCCTCTAAGATGTAAAAGTCTCCTGTCCACACCACTTGGCTCTAGCTGTGCAATAGAAAGCTATCATCATCCCCTCTGCGAGCTGTCGTCTGGGTACTGGCAAGTAATACCTGACAAAAAGGAACAAATTCGCCTCTTCTGTGATGGGTGGCCCAACTTGGATATACTTACATACTGACACGCTGAAACCTTAAGATCAAGTGACCTATTAGAAACACAGGAGACCTAAACCTGATACATGAACATGAAAATGAAGGCCAGGAGGCGAGCAAGAATCAGAGAAGAAAGACAATCCCTACTTGTCAAATGTGATGAGAAAAGTGCTTGGTTCCTGGAACAAATATTACATATAAAAAAAGAAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301922 lncRNA downstream 401 6319561 ~ 6319837 (-) True G266016
TU301890 lncRNA downstream 15289 6304483 ~ 6304949 (-) True G265985
TU301881 lncRNA downstream 36392 6283058 ~ 6283846 (-) False G265976
TU301912 lncRNA downstream 60547 6259466 ~ 6259691 (-) True G266006
TU301911 lncRNA downstream 60841 6259195 ~ 6259397 (-) True G266005
TU301924 lncRNA upstream 271 6320899 ~ 6321186 (-) True G266018
TU301948 lncRNA upstream 26253 6346881 ~ 6349001 (-) True G266038
TU301971 lncRNA upstream 97606 6418234 ~ 6419120 (-) True G266056
TU301973 lncRNA upstream 105307 6425935 ~ 6427768 (-) True G266057
TU301998 lncRNA upstream 130972 6451600 ~ 6451883 (-) True G266074
CI01000063_06291489_06291799.mRNA mRNA downstream 28439 6291214 ~ 6291799 (-) True CI01000063_06291489_06291799
CI01000063_06271330_06273137.mRNA mRNA downstream 47101 6270763 ~ 6273137 (-) True CI01000063_06271330_06273137
CI01000063_06110909_06118565.mRNA mRNA downstream 200319 6110909 ~ 6119919 (-) True CI01000063_06110909_06118565
CI01000063_06018383_06022776.mRNA mRNA downstream 296751 6018083 ~ 6023487 (-) True CI01000063_06018383_06022776
CI01000063_06011344_06017382.mRNA mRNA downstream 302856 6010663 ~ 6017382 (-) True CI01000063_06011344_06017382
CI01000063_06332215_06332433.mRNA mRNA upstream 11521 6332149 ~ 6332433 (-) True CI01000063_06332215_06332433
CI01000063_06404520_06407506.mRNA mRNA upstream 83196 6403824 ~ 6407676 (-) True CI01000063_06404520_06407506
CI01000063_06652744_06663333.mRNA mRNA upstream 331508 6652136 ~ 6663590 (-) True CI01000063_06652744_06663333
CI01000063_07092189_07106801.mRNA mRNA upstream 771462 7092090 ~ 7107755 (-) True CI01000063_07092189_07106801
CI01000063_07114269_07117313.mRNA mRNA upstream 792779 7113407 ~ 7117798 (-) True CI01000063_07114269_07117313
TU301878 other downstream 29292 6288158 ~ 6290946 (-) True G265976
TU301675 other downstream 703126 5546701 ~ 5546719 (-) True G265781
TU301422 other downstream 1066298 5250835 ~ 5253940 (-) False CI01000063_05252331_05253850
TU301417 other downstream 1066427 5250835 ~ 5253811 (-) False CI01000063_05252331_05253850
TU302824 other upstream 968867 7289495 ~ 7290013 (-) False G266797
TU302823 other upstream 969100 7289728 ~ 7290013 (-) False G266797
TU302826 other upstream 969100 7289728 ~ 7290224 (-) True G266797
TU302679 other upstream 1118457 7439085 ~ 7441435 (-) True G266660

Expression Profile