Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU301948 |
| length | 1665 |
| lncRNA type | antisense_over |
| GC content | 0.43 |
| exon number | 2 |
| gene id | G266038 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000063 |
| NCBI id | null |
| chromosome length | 7808773 |
| location | 6346881 ~ 6349001 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU301924 | lncRNA | downstream | 25695 | 6320899 ~ 6321186 (-) | True | G266018 |
| TU301923 | lncRNA | downstream | 26253 | 6320238 ~ 6320628 (-) | True | G266017 |
| TU301922 | lncRNA | downstream | 27044 | 6319561 ~ 6319837 (-) | True | G266016 |
| TU301890 | lncRNA | downstream | 41932 | 6304483 ~ 6304949 (-) | True | G265985 |
| TU301881 | lncRNA | downstream | 63035 | 6283058 ~ 6283846 (-) | False | G265976 |
| TU301971 | lncRNA | upstream | 69233 | 6418234 ~ 6419120 (-) | True | G266056 |
| TU301973 | lncRNA | upstream | 76934 | 6425935 ~ 6427768 (-) | True | G266057 |
| TU301998 | lncRNA | upstream | 102599 | 6451600 ~ 6451883 (-) | True | G266074 |
| TU302008 | lncRNA | upstream | 131263 | 6480264 ~ 6481207 (-) | True | G266084 |
| TU302028 | lncRNA | upstream | 134178 | 6483179 ~ 6566769 (-) | True | G266103 |
| CI01000063_06332215_06332433.mRNA | mRNA | downstream | 14448 | 6332149 ~ 6332433 (-) | True | CI01000063_06332215_06332433 |
| CI01000063_06291489_06291799.mRNA | mRNA | downstream | 55082 | 6291214 ~ 6291799 (-) | True | CI01000063_06291489_06291799 |
| CI01000063_06271330_06273137.mRNA | mRNA | downstream | 73744 | 6270763 ~ 6273137 (-) | True | CI01000063_06271330_06273137 |
| CI01000063_06110909_06118565.mRNA | mRNA | downstream | 226962 | 6110909 ~ 6119919 (-) | True | CI01000063_06110909_06118565 |
| CI01000063_06018383_06022776.mRNA | mRNA | downstream | 323394 | 6018083 ~ 6023487 (-) | True | CI01000063_06018383_06022776 |
| CI01000063_06404520_06407506.mRNA | mRNA | upstream | 54823 | 6403824 ~ 6407676 (-) | True | CI01000063_06404520_06407506 |
| CI01000063_06652744_06663333.mRNA | mRNA | upstream | 303135 | 6652136 ~ 6663590 (-) | True | CI01000063_06652744_06663333 |
| CI01000063_07092189_07106801.mRNA | mRNA | upstream | 743089 | 7092090 ~ 7107755 (-) | True | CI01000063_07092189_07106801 |
| CI01000063_07114269_07117313.mRNA | mRNA | upstream | 764406 | 7113407 ~ 7117798 (-) | True | CI01000063_07114269_07117313 |
| CI01000063_07147043_07192035.mRNA | mRNA | upstream | 797005 | 7146006 ~ 7192035 (-) | True | CI01000063_07147043_07192035 |
| TU301878 | other | downstream | 55935 | 6288158 ~ 6290946 (-) | True | G265976 |
| TU301675 | other | downstream | 729769 | 5546701 ~ 5546719 (-) | True | G265781 |
| TU301422 | other | downstream | 1092941 | 5250835 ~ 5253940 (-) | False | CI01000063_05252331_05253850 |
| TU301417 | other | downstream | 1093070 | 5250835 ~ 5253811 (-) | False | CI01000063_05252331_05253850 |
| TU302824 | other | upstream | 940494 | 7289495 ~ 7290013 (-) | False | G266797 |
| TU302823 | other | upstream | 940727 | 7289728 ~ 7290013 (-) | False | G266797 |
| TU302826 | other | upstream | 940727 | 7289728 ~ 7290224 (-) | True | G266797 |
| TU302679 | other | upstream | 1090084 | 7439085 ~ 7441435 (-) | True | G266660 |
