RNA id: TU301971


Basic Information

Item Value
RNA id TU301971
length 887
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G266056
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 6418234 ~ 6419120 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGATAATGGAATGTTTTTTATTCACTGTGCTGGACACAAAAAGCCATGTTGATAAGCCTTCAGTTCATAGTAATACATTGCACATGAAAATGACAAATATGACCAAAATTGGTGCCTAGCAAAAACTTTGACCAATCAATCACTGGTTGAGTTAAGCGTGACTGAAAAACTCATTGCACATTCCTATATGTCCGGCAGCCCAACACCTTAGTGTGACATGAATTAGTGTGATTTAAAGTAAGATATACAAATATAGAGGTCACTGTGACAAATAACAAAATCAACACAAGCTTTTCTTTTTATATCTTTCCTCTGAGAGGCAAAAGTGCTCAAACAAACAGAAACCCTCTGGGTATTGTCTCAAATTAGTCATCTTATCTAATCAAGCAGTACAAAAGATACCTGAAGCCTACCTAACAGCAGTCTATATGTGTTAGTAGGGCAAACGCACTGAATAAAGATAGCATTAAGACTGCTTAATAAACCTTATGCTGTTTCCCCATTCATAATGTCCTAAACTAAATTTGTACAATCAAGTAATTGCATCATTGCAGCTATGGTCAGTTATAGTGATATAGTTCTCTTTTTTCGAGAATCCAAACTATTTCTCTAAGAAAAGAACATCGGAGGCATTTCACCAAAATACTGCAACACGATGAAATCATTTACAATTCTTATACTTCACTGAGGTTGCCACGGTGCTTCCTAATGTCTTGAGATGTGCCATTCGCTGTCGGTCAACTGCACCAGCTCATTGACTACATCAAGCAAACTGTAGTGATGCTTCCTCAGCAACCTCTGATTGAGCGGCTGGTTGCTGAAACCCATCTCCTGTAAAACAGCCATCATGGAGGCATCCTCGCAGGCTGGGTCAACGGCAGGCCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301948 lncRNA downstream 69233 6346881 ~ 6349001 (-) True G266038
TU301924 lncRNA downstream 97048 6320899 ~ 6321186 (-) True G266018
TU301923 lncRNA downstream 97606 6320238 ~ 6320628 (-) True G266017
TU301922 lncRNA downstream 98397 6319561 ~ 6319837 (-) True G266016
TU301890 lncRNA downstream 113285 6304483 ~ 6304949 (-) True G265985
TU301973 lncRNA upstream 6815 6425935 ~ 6427768 (-) True G266057
TU301998 lncRNA upstream 32480 6451600 ~ 6451883 (-) True G266074
TU302008 lncRNA upstream 61144 6480264 ~ 6481207 (-) True G266084
TU302028 lncRNA upstream 64059 6483179 ~ 6566769 (-) True G266103
TU302063 lncRNA upstream 154104 6573224 ~ 6594098 (-) True G266136
CI01000063_06404520_06407506.mRNA mRNA downstream 10558 6403824 ~ 6407676 (-) True CI01000063_06404520_06407506
CI01000063_06332215_06332433.mRNA mRNA downstream 85801 6332149 ~ 6332433 (-) True CI01000063_06332215_06332433
CI01000063_06291489_06291799.mRNA mRNA downstream 126435 6291214 ~ 6291799 (-) True CI01000063_06291489_06291799
CI01000063_06271330_06273137.mRNA mRNA downstream 145097 6270763 ~ 6273137 (-) True CI01000063_06271330_06273137
CI01000063_06110909_06118565.mRNA mRNA downstream 298315 6110909 ~ 6119919 (-) True CI01000063_06110909_06118565
CI01000063_06652744_06663333.mRNA mRNA upstream 233016 6652136 ~ 6663590 (-) True CI01000063_06652744_06663333
CI01000063_07092189_07106801.mRNA mRNA upstream 672970 7092090 ~ 7107755 (-) True CI01000063_07092189_07106801
CI01000063_07114269_07117313.mRNA mRNA upstream 694287 7113407 ~ 7117798 (-) True CI01000063_07114269_07117313
CI01000063_07147043_07192035.mRNA mRNA upstream 726886 7146006 ~ 7192035 (-) True CI01000063_07147043_07192035
CI01000063_07205887_07209986.mRNA mRNA upstream 786735 7205855 ~ 7210671 (-) False CI01000063_07205887_07209986
TU301878 other downstream 127288 6288158 ~ 6290946 (-) True G265976
TU301675 other downstream 801122 5546701 ~ 5546719 (-) True G265781
TU301422 other downstream 1164294 5250835 ~ 5253940 (-) False CI01000063_05252331_05253850
TU301417 other downstream 1164423 5250835 ~ 5253811 (-) False CI01000063_05252331_05253850
TU302824 other upstream 870375 7289495 ~ 7290013 (-) False G266797
TU302823 other upstream 870608 7289728 ~ 7290013 (-) False G266797
TU302826 other upstream 870608 7289728 ~ 7290224 (-) True G266797
TU302679 other upstream 1019965 7439085 ~ 7441435 (-) True G266660

Expression Profile