RNA id: TU302653


Basic Information

Item Value
RNA id TU302653
length 348
lncRNA type intronic
GC content 0.39
exon number 1
gene id G266642
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 6932077 ~ 6932424 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCATATCACGTTGCAGTGTCCATAGAAATTTTGTGTGCTCAAAGTCTAGTATGACTGCGGCTTTACCTTTGTCTTCACAAATGGACATTTTGACATTTTTTTGTGTGTATTTGACCGTTCAAGTGCAATAAACCTAGGAAGAGAACACAATTTGCTCCTCGCAGGCGACAGGCGACAAGTGCATGCACAGAAATCTGCAGCCGGTCTGACATCGGTCAGTATGTCAGTACCGAAATAAGTTCTCAATTGTGGTACACTGCTCTTTGAATAACTCTTTTTAGTATCATCAAGCATATCATACTTTTTATTTCTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302652 lncRNA downstream 2751 6928846 ~ 6929326 (-) True G266641
TU302478 lncRNA downstream 220928 6669392 ~ 6711149 (-) False G266498
TU302479 lncRNA downstream 260313 6669392 ~ 6671764 (-) True G266498
TU302477 lncRNA downstream 263788 6666329 ~ 6668289 (-) True G266497
TU302462 lncRNA downstream 311896 6619864 ~ 6620181 (-) True G266482
TU302742 lncRNA upstream 91968 7024392 ~ 7024605 (-) True G266722
TU302760 lncRNA upstream 123646 7056070 ~ 7056307 (-) True G266740
TU302766 lncRNA upstream 135611 7068035 ~ 7068248 (-) True G266746
TU302678 lncRNA upstream 145927 7078351 ~ 7124028 (-) True G266659
TU302710 lncRNA upstream 274730 7207154 ~ 7207868 (-) True CI01000063_07205887_07209986
CI01000063_06652744_06663333.mRNA mRNA downstream 268487 6652136 ~ 6663590 (-) True CI01000063_06652744_06663333
CI01000063_06404520_06407506.mRNA mRNA downstream 524401 6403824 ~ 6407676 (-) True CI01000063_06404520_06407506
CI01000063_06332215_06332433.mRNA mRNA downstream 599644 6332149 ~ 6332433 (-) True CI01000063_06332215_06332433
CI01000063_06291489_06291799.mRNA mRNA downstream 640278 6291214 ~ 6291799 (-) True CI01000063_06291489_06291799
CI01000063_06271330_06273137.mRNA mRNA downstream 658940 6270763 ~ 6273137 (-) True CI01000063_06271330_06273137
CI01000063_07092189_07106801.mRNA mRNA upstream 159666 7092090 ~ 7107755 (-) True CI01000063_07092189_07106801
CI01000063_07114269_07117313.mRNA mRNA upstream 180983 7113407 ~ 7117798 (-) True CI01000063_07114269_07117313
CI01000063_07147043_07192035.mRNA mRNA upstream 213582 7146006 ~ 7192035 (-) True CI01000063_07147043_07192035
CI01000063_07205887_07209986.mRNA mRNA upstream 273431 7205855 ~ 7210671 (-) False CI01000063_07205887_07209986
CI01000063_07217465_07224133.mRNA mRNA upstream 284562 7216986 ~ 7224322 (-) True CI01000063_07217465_07224133
TU301878 other downstream 641131 6288158 ~ 6290946 (-) True G265976
TU301675 other downstream 1314965 5546701 ~ 5546719 (-) True G265781
TU301422 other downstream 1678137 5250835 ~ 5253940 (-) False CI01000063_05252331_05253850
TU301417 other downstream 1678266 5250835 ~ 5253811 (-) False CI01000063_05252331_05253850
TU302824 other upstream 357071 7289495 ~ 7290013 (-) False G266797
TU302823 other upstream 357304 7289728 ~ 7290013 (-) False G266797
TU302826 other upstream 357304 7289728 ~ 7290224 (-) True G266797
TU302679 other upstream 506661 7439085 ~ 7441435 (-) True G266660

Expression Profile