Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU302697 |
| length | 1304 |
| lncRNA type | antisense_over |
| GC content | 0.56 |
| exon number | 4 |
| gene id | G266677 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000063 |
| NCBI id | null |
| chromosome length | 7808773 |
| location | 7266521 ~ 7276565 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU302792 | lncRNA | downstream | 41104 | 7225217 ~ 7225417 (-) | True | G266772 |
| TU302710 | lncRNA | downstream | 58653 | 7207154 ~ 7207868 (-) | True | CI01000063_07205887_07209986 |
| TU302678 | lncRNA | downstream | 142493 | 7078351 ~ 7124028 (-) | True | G266659 |
| TU302766 | lncRNA | downstream | 198273 | 7068035 ~ 7068248 (-) | True | G266746 |
| TU302760 | lncRNA | downstream | 210214 | 7056070 ~ 7056307 (-) | True | G266740 |
| TU302821 | lncRNA | upstream | 5367 | 7281932 ~ 7282258 (-) | True | G266795 |
| TU302837 | lncRNA | upstream | 55774 | 7332339 ~ 7332614 (-) | True | G266808 |
| TU302847 | lncRNA | upstream | 74772 | 7351337 ~ 7351637 (-) | True | G266818 |
| TU302846 | lncRNA | upstream | 75253 | 7351818 ~ 7352264 (-) | True | G266817 |
| TU302680 | lncRNA | upstream | 98206 | 7381082 ~ 7381335 (-) | True | G266661 |
| CI01000063_07217465_07224133.mRNA | mRNA | downstream | 42199 | 7216986 ~ 7224322 (-) | True | CI01000063_07217465_07224133 |
| CI01000063_07205887_07209986.mRNA | mRNA | downstream | 55850 | 7205855 ~ 7210671 (-) | False | CI01000063_07205887_07209986 |
| CI01000063_07147043_07192035.mRNA | mRNA | downstream | 74486 | 7146006 ~ 7192035 (-) | True | CI01000063_07147043_07192035 |
| CI01000063_07114269_07117313.mRNA | mRNA | downstream | 148723 | 7113407 ~ 7117798 (-) | True | CI01000063_07114269_07117313 |
| CI01000063_07092189_07106801.mRNA | mRNA | downstream | 158766 | 7092090 ~ 7107755 (-) | True | CI01000063_07092189_07106801 |
| CI01000063_07356051_07365604.mRNA | mRNA | upstream | 79437 | 7356002 ~ 7365604 (-) | True | CI01000063_07356051_07365604 |
| CI01000063_07369762_07372353.mRNA | mRNA | upstream | 93147 | 7369712 ~ 7372353 (-) | True | CI01000063_07369762_07372353 |
| CI01000063_07377062_07377408.mRNA | mRNA | upstream | 99768 | 7376333 ~ 7377408 (-) | False | CI01000063_07377062_07377408 |
| CI01000063_07394616_07396752.mRNA | mRNA | upstream | 118051 | 7394616 ~ 7399019 (-) | True | CI01000063_07394616_07396752 |
| CI01000063_07411237_07413430.mRNA | mRNA | upstream | 133610 | 7410175 ~ 7413430 (-) | True | CI01000063_07411237_07413430 |
| TU301878 | other | downstream | 975575 | 6288158 ~ 6290946 (-) | True | G265976 |
| TU301675 | other | downstream | 1649409 | 5546701 ~ 5546719 (-) | True | G265781 |
| TU301422 | other | downstream | 2012581 | 5250835 ~ 5253940 (-) | False | CI01000063_05252331_05253850 |
| TU301417 | other | downstream | 2012710 | 5250835 ~ 5253811 (-) | False | CI01000063_05252331_05253850 |
| TU302824 | other | upstream | 12930 | 7289495 ~ 7290013 (-) | False | G266797 |
| TU302823 | other | upstream | 13163 | 7289728 ~ 7290013 (-) | False | G266797 |
| TU302826 | other | upstream | 13163 | 7289728 ~ 7290224 (-) | True | G266797 |
| TU302679 | other | upstream | 162520 | 7439085 ~ 7441435 (-) | True | G266660 |
