RNA id: TU302846


Basic Information

Item Value
RNA id TU302846
length 447
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G266817
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 7351818 ~ 7352264 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATTAAAAGATGGAATCCCAGCTGGTGTATAGAGCCATGGTCTGTTAGACATCATGGCTCTTTTATTTCCAGCATGTGTTGTCTGAGTGGCCTAGGGTTTAATGTGCTTATTGATTGTGCTCCCTGTAGGGGTGCATTTTGGGATTGACTGGACACACAAATGTTGTACTGTAAGGCTCATATTTGAATGCACAATGTATTAACTCATTGTGCTAAATTGTTATGCAGCACACAAGTGCATGCAACATTAGCCTGTTTAAATAAATCTGTTTAATATGAAAATTTCTAATGTTGTTTACAATGAGACAACATTGTATTATTGTACATAAAGTTTTTTTTTTAACAATCTGAAAAAACAGCTATGTTACAGCAACTATTGCTGAAGCCAGTTTGAAGATCAGTACATGCTTAAAGTGTTAGTTCACCCAAAAATGAAAATAATGTCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302847 lncRNA downstream 181 7351337 ~ 7351637 (-) True G266818
TU302837 lncRNA downstream 19204 7332339 ~ 7332614 (-) True G266808
TU302821 lncRNA downstream 69560 7281932 ~ 7282258 (-) True G266795
TU302697 lncRNA downstream 75253 7266521 ~ 7276565 (-) True G266677
TU302792 lncRNA downstream 126401 7225217 ~ 7225417 (-) True G266772
TU302680 lncRNA upstream 22507 7381082 ~ 7381335 (-) True G266661
TU302689 lncRNA upstream 84533 7436797 ~ 7438252 (-) True G266669
TU302705 lncRNA upstream 112205 7464469 ~ 7467147 (-) True G266685
TU302856 lncRNA upstream 128370 7480634 ~ 7480877 (-) True G266827
TU302660 lncRNA upstream 159672 7511936 ~ 7515695 (-) True G266647
CI01000063_07217465_07224133.mRNA mRNA downstream 127496 7216986 ~ 7224322 (-) True CI01000063_07217465_07224133
CI01000063_07205887_07209986.mRNA mRNA downstream 141147 7205855 ~ 7210671 (-) False CI01000063_07205887_07209986
CI01000063_07147043_07192035.mRNA mRNA downstream 159783 7146006 ~ 7192035 (-) True CI01000063_07147043_07192035
CI01000063_07114269_07117313.mRNA mRNA downstream 234020 7113407 ~ 7117798 (-) True CI01000063_07114269_07117313
CI01000063_07092189_07106801.mRNA mRNA downstream 244063 7092090 ~ 7107755 (-) True CI01000063_07092189_07106801
CI01000063_07356051_07365604.mRNA mRNA upstream 3738 7356002 ~ 7365604 (-) True CI01000063_07356051_07365604
CI01000063_07369762_07372353.mRNA mRNA upstream 17448 7369712 ~ 7372353 (-) True CI01000063_07369762_07372353
CI01000063_07377062_07377408.mRNA mRNA upstream 24069 7376333 ~ 7377408 (-) False CI01000063_07377062_07377408
CI01000063_07394616_07396752.mRNA mRNA upstream 42352 7394616 ~ 7399019 (-) True CI01000063_07394616_07396752
CI01000063_07411237_07413430.mRNA mRNA upstream 57911 7410175 ~ 7413430 (-) True CI01000063_07411237_07413430
TU302826 other downstream 61594 7289728 ~ 7290224 (-) True G266797
TU302824 other downstream 61805 7289495 ~ 7290013 (-) False G266797
TU302823 other downstream 61805 7289728 ~ 7290013 (-) False G266797
TU301878 other downstream 1060872 6288158 ~ 6290946 (-) True G265976
TU301675 other downstream 1734706 5546701 ~ 5546719 (-) True G265781
TU302679 other upstream 86821 7439085 ~ 7441435 (-) True G266660

Expression Profile