RNA id: TU302679


Basic Information

Item Value
RNA id TU302679
length 2113
RNA type TUCP
GC content 0.41
exon number 3
gene id G266660
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 7439085 ~ 7441435 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGCTTCTCCTGTGATCCTCTTCTAATGCCTAATCATATGCAACTATGCATATCTAAACCATCTGAAGTTACTAAAGACACATGCATTGTGGAAATAGGATTGTATTGGCAGAAAGCATATGGACTGAAATATTTCAGGGTGTACACTTGGAAAGTCCAGGTTCATCTTTTTGCACTGAGTACATCACTGTTAAAATGAAAACTCAGCTTCATCTAGCCAATCAATCTTCACTGCAAAATGACAACACAAAAACTATACAATAGCTTTAACTGCTAAAGGAAAAACAACTGCTTAACACATTGCATAATGACTCCAAATGATTTGTCTAGGTTGACATCAAAGCAAAGAGCTGAGTTCACAAATAATTGTATCCAGTTTTTATTTTTCAAGGAAATTGTGCAATAGTTATTGACATGTTGGTGATATATCTGGTGTGAGTGTTTGGGGATATATGGTACCTGTCTAAAGCGGAATCAGTTGAGACAAATTTTCTTTTGCATGAATATTTCTTGGTCTCAGAGTTGATCTCTGTTTTGTCTTTTTGAAGTCACTGCACCACCACCTCTGTTTCTAATTCTGCAGCTCTCCTCATTCCACCCAGTACCCATCACATCTGTTCATTACTAACTTTAAAGGGGTTCAATAACATTGAGTGTCACCATAGAAACTGACTGACTGACTGACTAACTACATTACTGGATAGAGTTACTCTATGACTCAAATGGATAAGGCCATAATTGTCAAAACAAAACATTCTCTGTGAACTTTAAAAGTCTGTCATATTCTGTGGGGTTATCACATTTATGATATTTAGAAATCGGAGCAGATACAGTCTTTTTTTTCATGGTGATTCAAAAATGCAAGTATAAAACAGAAAAAGTAAGAGAAAAAACTCAATGGATTCCTCTGCAATGAAGGAGCACTGCTTGTGTGCTATAGACCATGACTACTTCACAACTGTTTCCATTCTGTCACTGTCTGTTTGGTCACTAGCACCACCTATCACAGATGGGTGAAAGTGGCCCTTTAGAGCATTTTAAAATACCACAGCATGGTAATCCTGTGCTTCAAGACCACTTTTATCCCTTCTTTTCTCATCTACTGTTTTCAGTCCATCAAGAAGTCCACTCTAAATTAGGTGATGTAGATGCGGTGGAAGTCATTTGCTCCGAATGCAGCATTGCATTTGGGGCACTTCCTCTGGCGAGTGTCATAGCGAGTCTTCAAGCATTCATAGCAGAAGACGTGGAAACACTTGGTGAGGACGGTCTCCTTATCTCGCGTATTACAACAGGGACATCGCAATTTAGCCTAGAATGGAGACAACAGCTTACGCCGCAGCCTGGACAAGTCCTCCTGAAATGACAGCATAGTAGAAGAGTTTCACACACCGTTCCCACTCATTTGTATCCCAAACAACATGTTTCTACAACATGCGTGCCCATGTACCTGTGCTTTCTTGAGGTTGGCGCTCTCCCTTTCACGGGCAGTGCGGTTGTCTAGTACTGAGGCTTGGATTTCCCTCAGCTTGGTCTGAGTGTGTTCCAGCTGCACTTTAAGGTCCTCGGCCAACTGGGCCGCCTCCACCGCCTGAGCCATCAATTGCTGGCTAAGCTGAGTCATGGTTGTCATAGACATCAGAACAGAGGTGGGCGTCTGTGATCCTTCCGGTTTTACCTTGCGCTTGTTGAGCTCCAGTGCTTGAGTGCGCAGCGCCAGCTCTTTCTCCAGAGCGGCCAGTGTGCTCTGCAGGACACCCTCCTTCTCTTCTAGTTTCTGCACTACCAGCAGCTGAGCGTCCACCTGGGAAGGGCAGTAAAAAAAAGCAGATGATACAACTACATCATTATTGCAAAAACAGAAGTTGTTAAACATAACATGCAGATTTACTGCCTCAAAACGGAAAGGCCCATCAATTTAAGCTTTCAGTCTAGCAGGGATGGGCTGACTAGTTGTCTATCAACCAACTAGTTAATTCGTTAATCTAGATTTTTGCTTTATTTTTTAGTGGTGGTAATTCAAACTTTAAGGATATTTTTGAAGTGCAGATTTGCAAATTAATGGATAGTTTACCTAAAAATGAAAATTTTCCCATGATTTACTCACCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302689 lncRNA downstream 833 7436797 ~ 7438252 (-) True G266669
TU302680 lncRNA downstream 57750 7381082 ~ 7381335 (-) True G266661
TU302846 lncRNA downstream 86821 7351818 ~ 7352264 (-) True G266817
TU302847 lncRNA downstream 87448 7351337 ~ 7351637 (-) True G266818
TU302837 lncRNA downstream 106471 7332339 ~ 7332614 (-) True G266808
TU302705 lncRNA upstream 23034 7464469 ~ 7467147 (-) True G266685
TU302856 lncRNA upstream 39199 7480634 ~ 7480877 (-) True G266827
TU302660 lncRNA upstream 70501 7511936 ~ 7515695 (-) True G266647
TU302862 lncRNA upstream 81283 7522718 ~ 7522990 (-) True G266833
TU302690 lncRNA upstream 151019 7592454 ~ 7592720 (-) True G266670
CI01000063_07424567_07426570.mRNA mRNA downstream 12515 7424361 ~ 7426570 (-) True CI01000063_07424567_07426570
CI01000063_07411237_07413430.mRNA mRNA downstream 25655 7410175 ~ 7413430 (-) True CI01000063_07411237_07413430
CI01000063_07394616_07396752.mRNA mRNA downstream 40066 7394616 ~ 7399019 (-) True CI01000063_07394616_07396752
CI01000063_07377062_07377408.mRNA mRNA downstream 61677 7376333 ~ 7377408 (-) False CI01000063_07377062_07377408
CI01000063_07369762_07372353.mRNA mRNA downstream 66732 7369712 ~ 7372353 (-) True CI01000063_07369762_07372353
CI01000063_07450175_07455382.mRNA mRNA upstream 7727 7449162 ~ 7455585 (-) True CI01000063_07450175_07455382
CI01000063_07458562_07458738.mRNA mRNA upstream 16380 7457815 ~ 7458854 (-) True CI01000063_07458562_07458738
CI01000063_07483274_07486490.mRNA mRNA upstream 41667 7483102 ~ 7487618 (-) True CI01000063_07483274_07486490
CI01000063_07493274_07509323.mRNA mRNA upstream 51577 7493012 ~ 7509323 (-) True CI01000063_07493274_07509323
CI01000063_07516671_07521503.mRNA mRNA upstream 75011 7516446 ~ 7521861 (-) True CI01000063_07516671_07521503
TU302826 other downstream 148861 7289728 ~ 7290224 (-) True G266797
TU302824 other downstream 149072 7289495 ~ 7290013 (-) False G266797
TU302823 other downstream 149072 7289728 ~ 7290013 (-) False G266797
TU301878 other downstream 1148139 6288158 ~ 6290946 (-) True G265976
TU301675 other downstream 1821973 5546701 ~ 5546719 (-) True G265781

Expression Profile