RNA id: TU302660


Basic Information

Item Value
RNA id TU302660
length 3003
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G266647
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 7511936 ~ 7515695 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTGTATAAGCACAATTTATTTTCATTTATGGAGGGTTTCTTTTGCTCATTTTACACCAGACAACAGACTAACAGACCAGTAAAGAATTAGCTATGCACAAAAATGCAGTCATGCTCAGAGAAAGAAAACCTTTATTTATCATTCACATGAATATTATGACCAATTGAGCATGTCAAATATTATGGAACTCTTCCGGAGATGTGAAAAGCTTAAATATCTGCCTTATAATGGGTTTTCACAAAAGGACTTGCACAGGATCTTTCTGCAAAAAGAAAAACGCTACAGCCGAATTTAAACAATCAGTCAAATCAAGGTGTTACACAGGAGCAATCAGGAGAATACTGGAAACAGCCAAGCACTCTGCACCGCAACACGCCACCTTAACAGCTAACCAGCAAAACTCAACTGCTATGCAACTGCGCCTAGTGCATAGAAAATACACAAGAGAGAATATTAGAATCATGTTGTGAAATTTCCCATTTAAACCATAACATCTGCTTGGTTAGCAATTATGTTATGGTTTTACATAGTAAGATTTCTTAAGAGGCCAAATTACAGTCTGTAGTACCCAGTCCTTTAGGGTCAAAGAAATATGCACAACATCCAGAATTGTCCATTAATGTTTATTAAGAACAAAAAACCTGATTAAAATGAACTTACTTTATAGTCTGGGAGTTTCAATAACATGAAGTAAAAAAAAAAAAAAAAGAAAAGAAAAAGAAAAACAAAACTACCAAAAATGAGAAAGGATTTCAACTAGTAGCCCCATTTAGGCATAAAGATCATTTAATATCACAGAATTCAAATGTATGATACAAAACAATTGTGGGCAACAGAAACAAGCAATTTAAAAGATTTAGACCAAATTACAATAACCTTTCGGTCTGATATATGGATAATTTGGGTATCCTCAGACGGACATCTGTTCGATGCGATCCTCAAAGAGTCAACCAGTTGACATCATCTAGAAGAAAAGAATAATAAAGTTAGTTTCAAAGAGCATTAAAGCAGAGGAGGTTCTACAATAATCGCCATAAAACAAAGCATTGCATATTACGCAATGCTCGACTTTGGTCATCAGTTACACAGAACAAACAGGCACTCTTTCCACACAAATAACTAACCATGTTTACATGAATCTATGGACCTGGTTTTTGTTCTGCAAGAAACCTTGTGTACCTGATATTTGTTCTGCGAGAAACCTCAAGGGAAGAGAGCCAACAAACCTGAGGGTGAAATATGAACTTCTCAAAGCCACTTTAAGTGTCGGCAAGCTGAGGTATATCTCATTTACCGCCAGTTAGAATAGTAATAAATAGCCAAATAAGTTAATTAGGCCTATATCAGACACCCAGCAGCCTGACAGCTTAAACTCTGGCTCTGAGAACACACCCGTATCCATCCCATTTTTGCCTATGCCACGATAGACATGAGTTTGTGACAAGGATGATGGAAAGGTCTCAGTCCATTGTCCTGCAGACGTACCTCAACACCACCTCAACACTCAATGAGACCGACCTGCTCCATAGCAACCGCCAATCAGCAGCAGGCAGCCAATGGACGGATCACACACTAACTGCTCTCAAACTGCCCCAAACTCCTCTTTTGCAAACAGGAATCAGCAGCTTGGAGGAAAGAATTCCACATTTAGATGAAATCAATGGATTTTGGCTGGTACACGTTTCAAAACAAACACATACTTACGGTATTGTACCCAAGACAGCTCCAAATCAAATATCCATGTGAGGTTTAGGGCGTGTATTAAAAATTAACCTTTAAAAGTCATGCAGATTCAGAGATACCAGACAGATGCTGTGAATAACAGCTACTAATCAGGCTAAACTTGAGTAAAACCTGGCACCTCCATTAAGATAATTTATCTACCGTTCTGCTGCATCTGCAGATGTCTTGAAGGACTTGATGAAAGAGTAAAGTAGAGGGGCGAAACGTACAATATATTTCATATTTTAAAGCAGCCATTTTGTTATTAAAATAAATGCATGCCTTCACTTTCCCCACTTAAGGCATGAGTTTAAGCTGTTCTGCTCAAAAATCAATCAAGTTTAGGATTTAGGATATTTACCAAAAAAAAACGAACTGAAAGACGCACTTGTCATCAGAATTATTGGACGACAGTAAAAATGCCCCCAGTTGCAATAAAATTAATCATCTATACAAAGCATTAGACTCACCTACATTTCACGATTCAGCAGGGGCTCCAGTATCCTCTGGAGACTTGGGTCTGCTTCTCGATCTGGATCTTGATTTGGATCCTTTGTTTGATCTGGGAGTAGGACTCCTGGAGCGAGACTTGGACTTAGACCTTGAGCGGGACCTGGAAGCTGATTTGGACTTGCTTCTGCGTGGTGTGCGGGTTTTGGAACGGGACCGAGACCGGGAACGGGAGTAGGACCTTGACCTGGATCGGCTGTAACGAGATCTGCTACGGGAACGGGACCGGCTCCTGCTCCTGGACCTGCTGTGCCTCCTGCGCCGGGGACTACGGCTGCGGCTTCTCCGTCCATGTCCCCCGTACCTCCTCGGCGGGGCTCCACGGCGGCTGTAGTGCGAATCTGGCGGGCGCCCGTATCGCGCCATTTGCACGCGCAGCTCGCGCCCATCCAGCAGCGCGCCATCCATGGCGTCCATTGCGTCCTCCGCGTCCCGCTTATCATGGAAACGGACGAAGGCGAACCCGCGACTTTCTTTCGTGTATCGGTCTCTCGGGATGTAGACATCGCCGACTCGGCCGTACTTCTCGAAAACCCGCCGCAGCGTTTCAGGGGACGTGCGGTAAGTCAGATTGTCGACTTTTAAAGAAGTCATGCCCTCGACATCGGGCGGAGGTCTGCCGTAGCTCATCTTGAACTACTATCTCTACTACAGTATGTTATGCGAAAAAAATACGGTTTCTATCGAGATTTAGACGGAAAATAACGAACCATTCGGGAGAGTCGAAAGTAACACGCCGCGCGGTTTTCACTCTAAAATGGCTGTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302856 lncRNA downstream 31059 7480634 ~ 7480877 (-) True G266827
TU302705 lncRNA downstream 44789 7464469 ~ 7467147 (-) True G266685
TU302689 lncRNA downstream 73684 7436797 ~ 7438252 (-) True G266669
TU302680 lncRNA downstream 130601 7381082 ~ 7381335 (-) True G266661
TU302846 lncRNA downstream 159672 7351818 ~ 7352264 (-) True G266817
TU302862 lncRNA upstream 7023 7522718 ~ 7522990 (-) True G266833
TU302690 lncRNA upstream 76759 7592454 ~ 7592720 (-) True G266670
TU302878 lncRNA upstream 173157 7688852 ~ 7689102 (-) True G266846
CI01000063_07493274_07509323.mRNA mRNA downstream 2613 7493012 ~ 7509323 (-) True CI01000063_07493274_07509323
CI01000063_07483274_07486490.mRNA mRNA downstream 24318 7483102 ~ 7487618 (-) True CI01000063_07483274_07486490
CI01000063_07458562_07458738.mRNA mRNA downstream 53082 7457815 ~ 7458854 (-) True CI01000063_07458562_07458738
CI01000063_07450175_07455382.mRNA mRNA downstream 56351 7449162 ~ 7455585 (-) True CI01000063_07450175_07455382
CI01000063_07424567_07426570.mRNA mRNA downstream 85366 7424361 ~ 7426570 (-) True CI01000063_07424567_07426570
CI01000063_07516671_07521503.mRNA mRNA upstream 751 7516446 ~ 7521861 (-) True CI01000063_07516671_07521503
CI01000063_07525686_07551770.mRNA mRNA upstream 9991 7525686 ~ 7551770 (-) True CI01000063_07525686_07551770
CI01000063_07578043_07590189.mRNA mRNA upstream 62281 7577976 ~ 7590691 (-) True CI01000063_07578043_07590189
CI01000063_07605652_07611233.mRNA mRNA upstream 89918 7605613 ~ 7611233 (-) True CI01000063_07605652_07611233
CI01000063_07619266_07636507.mRNA mRNA upstream 103405 7619100 ~ 7637052 (-) True CI01000063_07619266_07636507
TU302679 other downstream 70501 7439085 ~ 7441435 (-) True G266660
TU302826 other downstream 221712 7289728 ~ 7290224 (-) True G266797
TU302824 other downstream 221923 7289495 ~ 7290013 (-) False G266797
TU302823 other downstream 221923 7289728 ~ 7290013 (-) False G266797
TU301878 other downstream 1220990 6288158 ~ 6290946 (-) True G265976

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010437 False 1776 mRNA 0.46 3 NC_007123.7 31720673 ~ 31724387 (-)
bowfin (Amia calva) TU52112 True 3309 lncRNA 0.43 2 CM030125.1 18261963 ~ 18265695 (+)