RNA id: CI01000065_00097164_00097583.mRNA


Basic Information

Item Value
RNA id CI01000065_00097164_00097583.mRNA
length 687
RNA type mRNA
GC content 0.45
exon number 1
gene id CI01000065_00097164_00097583
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 96904 ~ 97590 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCATAATGGATGGAACCCAAGACCTAATCTGGAGCAAACAGGAATCCATAAGTCTGAGGCATGTAGACCATAACCTAATTCCACAAGAGGCTTTTATTGGATTTTATGAAGTTTCAGACACAACTGGTGAGCACTTGGATAAAGTCACTTTCAATGTCTTGGTGCGCTTGAATATGCCTTTGTCTGGTCTGCAAGAATATGATGGCGGAATCAAAGGGGCACAAGCCAAGATACTAGAGCAACAGCCACTAGCTTTATTTGTGCACTGTGGCCCTCATTGTGTGAATCTGGCTGCCCATGCTGCTTGCAAGTCATTAACCCTGACATGTGATGCATTGGATTGGGTCCATTGTCTCGGCTGTCTGTACAGTCTTTCTGGCAAGTTCAGAAATGCATTTAAAGAAATAGCAGCCACAAGGGGTTGATGTCCAGAGCTTAAAACACTGTAACCCACTAGGCGGGTTGAGAAGACTCCTGCCTTTAGGTCTGTACTAAGTCAGTATGAGACTGTGCTACTCAGCTTAGAGCAGATGGCAGAAATGAACTCTCAATCAACCACAGTAGCAACTGCCAGGGGGTTGTTGGTTAAATTTGAGAGAGGTACCACAGTCCTAGGGCTCTTGATGGCTTCAGAGGTTATTCAGGAGTTAGAATGCCTCAACTGCACATTGCAAAAGAGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303086 lncRNA downstream 3906 92762 ~ 92998 (-) True G267041
TU303084 lncRNA downstream 23042 73518 ~ 73862 (-) True G267039
TU303081 lncRNA downstream 27883 68816 ~ 69021 (-) True G267036
TU303080 lncRNA downstream 29636 67010 ~ 67268 (-) True G267035
TU303069 lncRNA downstream 44737 51885 ~ 52167 (-) False CI01000065_00050903_00055774
TU303092 lncRNA upstream 13521 111111 ~ 111811 (-) True G267047
TU303102 lncRNA upstream 44918 142508 ~ 143087 (-) True G267056
TU303146 lncRNA upstream 106679 204269 ~ 212348 (-) True G267097
TU303155 lncRNA upstream 121085 218675 ~ 218909 (-) True G267106
TU303178 lncRNA upstream 163772 261362 ~ 261598 (-) True G267129
CI01000065_00076766_00091631.mRNA mRNA downstream 5273 76685 ~ 91631 (-) True CI01000065_00076766_00091631
CI01000065_00050903_00055774.mRNA mRNA downstream 41130 50386 ~ 55774 (-) False CI01000065_00050903_00055774
CI01000065_00036512_00040370.mRNA mRNA downstream 56534 35848 ~ 40370 (-) False CI01000065_00036512_00040370
CI01000065_00000511_00000912.mRNA mRNA downstream 95992 131 ~ 912 (-) True CI01000065_00000511_00000912
CI01000065_00120723_00133111.mRNA mRNA upstream 22816 120406 ~ 133111 (-) True CI01000065_00120723_00133111
CI01000065_00253168_00255665.mRNA mRNA upstream 155101 252691 ~ 255710 (-) True CI01000065_00253168_00255665
CI01000065_00330696_00340165.mRNA mRNA upstream 233002 330592 ~ 340772 (-) True CI01000065_00330696_00340165
CI01000065_00444905_00447425.mRNA mRNA upstream 347090 444680 ~ 447425 (-) True CI01000065_00444905_00447425
CI01000065_00563411_00579174.mRNA mRNA upstream 465258 562848 ~ 580083 (-) False CI01000065_00563411_00579174
TU303067 other downstream 42517 54287 ~ 54387 (-) True G267025
TU303066 other downstream 50817 43039 ~ 46087 (-) True G267024
TU303798 other upstream 456761 554351 ~ 556828 (-) True G267718
TU303796 other upstream 456878 554468 ~ 556828 (-) True G267718
TU303828 other upstream 524842 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303837 other upstream 685107 783538 ~ 783661 (-) True G267748
TU305637 other upstream 3210853 3308443 ~ 3312404 (-) False G269348

Expression Profile