RNA id: CI01000065_00253168_00255665.mRNA



Basic Information


Item Value
RNA id CI01000065_00253168_00255665.mRNA
length 1695
RNA type mRNA
GC content 0.49
exon number 2
gene id CI01000065_00253168_00255665
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 252691 ~ 255710 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGAATGATTACTTTATATTCATAGTTTGCCTATCCTGAAGACGTCATGTGCGTAACGTCTGAACTGGGCATTGTGGTCACTCTTGAGCAGTGCGTTTCAGTAAGAGGCGCAGTGTGGCTTCAGATCCCAGAGATCAACGATCGACAGCTACAGGAGAAGTGCCGGGAGCAGAGACAGCCACTCAACATCGCTTTCATCGACCTGACCAAGGCCTTCGACTTGGTCAGCAGGAAAGGCCTCTTCACCCTACTGCACAGGATCGGATGTCCCCCCAAGCTTCTGAAGATGGTCATGTCCTTCCATGATGAAATGCAAGGTACCGTCCAGTACGATGGCTCATCTTCGGAACCTTTCCTGATCCGAAGCGGCGTGAAGCAAGGCTGCGTCCTCGCCCCGACACTCTTTGGCATCTTCTTCTCCCTGCTGCTGCGCCACGCCTTCAGTCAGTCAGAAGATGGTGTCTTCATCCACACTAGGAGCGATGGCAACCTTTTCAACCTTGCACGTCTGCGCGCAAAGACCAAGGTGCGCAGGGTCCTGATTAGGGAGATGCTGTTTGCTGATGACACCGCCCTGACTGCCCATACCGAGGAAGCACTACAGCGTCTCATCAGCAGCTTCGCTCGCGCCTCTGATGAGTTTGGGCTGACCATCAGCCTGAAGAAAACAAATGTCATGGGCCAGGATGTCTGCAGCACTCCCTATATCTCCATTGGCGATTACACCCTCGAGGTAGTGGAGGACTTTACATATCTTGGCTTCACTATCTCCAGCAACCTCTCTCTGGACAATGAGCTGATCACCAGAACCAGCAAGGCATCAATAGCGATGGCCCGCCTGACCAAGAGAATGTGGAACAACAGCATGCTCACCACCAACACTGAGATGAAAGTGTACCAGGCCAGTGTCCTCAGCACTCTTCTTTACGGCAGCGAGACATGGACTATGTACACCTGGCAAGAACGCAGACTTAACTCTTTCCATCTGCGCTGCCTGAGGAGGATCCTGGGCATCACCTGGCAGGACCGTGTCCCAAACACTGAAGTGCTGGCCCAGGCAAAAACATTCAGCATGCACGCACTCCTTTCACAAAGATGCCTACGCTGGCTCGGCCATGTCTGCCGCAGACCGTGTCAGCTGGCGGCTCGCCGTAAGGACCAGCATAAAGCTGAGCGAGGGAAAGAGAGAGGACCAGCGGGAGGAGAAGAGGCAGAGTAGATGGCAGAGAGCAGAGTCAGTGCCCACAGAAGCAGTCACAGGCTCTGCAGAAGCAGACTCGTATTAGACTGTTCAGCCACAGCAGGCACTGCGATTCCACAACAGACTGACTTGGGCGCAGATACTCCATTGTCTCCAGAGACAGAAGGATGCCAGTGAGAGCTGTTGCCAATCAAATGAAATCACTAACAACAAAATTCATTGTTGCACTGCATAGGTGGCACAGAAGTTGCATCTGACTTGGTCAAATTACAAATGCCTAAACAACTTTCTTTCTTTTGTTCTTTTGTTTATTGAAAGTTTGTATAAAATCAATATCACGTTTGCAATTGTGCTCAAATTTTTGAAAACAGCTCTCTTGCTCTTGTGATATTGCTTTTATAATAATTATATAATATATTGTAATATAAAAATCTAGATCTCATACAAGTACTTTTTTGCAACAATATCTTGAATTTTGTGGGCATTTGTATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU303155 lncRNA downstream 33782 218675 ~ 218909 (-) True G267106
TU303146 lncRNA downstream 40343 204269 ~ 212348 (-) True G267097
TU303102 lncRNA downstream 109604 142508 ~ 143087 (-) True G267056
TU303092 lncRNA downstream 140880 111111 ~ 111811 (-) True G267047
TU303086 lncRNA downstream 159693 92762 ~ 92998 (-) True G267041
TU303178 lncRNA upstream 5652 261362 ~ 261598 (-) True G267129
TU303185 lncRNA upstream 11448 267158 ~ 267388 (-) True G267136
TU303189 lncRNA upstream 14901 270611 ~ 270859 (-) True G267140
TU303208 lncRNA upstream 28162 283872 ~ 284099 (-) True G267159
TU303224 lncRNA upstream 41238 296948 ~ 297178 (-) True G267175
CI01000065_00120723_00133111.mRNA mRNA downstream 119580 120406 ~ 133111 (-) True CI01000065_00120723_00133111
CI01000065_00097164_00097583.mRNA mRNA downstream 155101 96904 ~ 97590 (-) True CI01000065_00097164_00097583
CI01000065_00076766_00091631.mRNA mRNA downstream 161060 76685 ~ 91631 (-) True CI01000065_00076766_00091631
CI01000065_00050903_00055774.mRNA mRNA downstream 196917 50386 ~ 55774 (-) False CI01000065_00050903_00055774
CI01000065_00036512_00040370.mRNA mRNA downstream 212321 35848 ~ 40370 (-) False CI01000065_00036512_00040370
CI01000065_00330696_00340165.mRNA mRNA upstream 74882 330592 ~ 340772 (-) True CI01000065_00330696_00340165
CI01000065_00444905_00447425.mRNA mRNA upstream 188970 444680 ~ 447425 (-) True CI01000065_00444905_00447425
CI01000065_00563411_00579174.mRNA mRNA upstream 307138 562848 ~ 580083 (-) False CI01000065_00563411_00579174
CI01000065_00622545_00624625.mRNA mRNA upstream 366413 622123 ~ 624625 (-) False CI01000065_00622545_00624625
CI01000065_00768127_00769942.mRNA mRNA upstream 511862 767572 ~ 770151 (-) True CI01000065_00768127_00769942
TU303067 other downstream 198304 54287 ~ 54387 (-) True G267025
TU303066 other downstream 206604 43039 ~ 46087 (-) True G267024
TU303798 other upstream 298641 554351 ~ 556828 (-) True G267718
TU303796 other upstream 298758 554468 ~ 556828 (-) True G267718
TU303828 other upstream 366722 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303837 other upstream 526987 783538 ~ 783661 (-) True G267748
TU305637 other upstream 3052733 3308443 ~ 3312404 (-) False G269348

Expression Profile