RNA id: CI01000065_00330696_00340165.mRNA



Basic Information


Item Value
RNA id CI01000065_00330696_00340165.mRNA
length 1857
RNA type mRNA
GC content 0.46
exon number 6
gene id CI01000065_00330696_00340165
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 330592 ~ 340772 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACTGTCAATGTCATCTTCAAGTGTCTTTTTTATTGTGCTAGCACTGCTCAAAGTTGTTCTGTTATATTTAATGGACTCTTCTGACCTGTTGAAACATTCAAGTTTATATTTAAAACAGGAATTATGAATTAAAAATACAATTATAATTGTAATGCCAATAAATGAATGCCACCTCTTGTCACACTCTCAGGTGTTTGCGTTACAAACAAACAGACGAAGAGTCAGATGGAATAAAAATCCAATATGAAGTTTAATCCAAACAGGCAAAGTAATCCAACAAAGGCAGAGAAACACACCATAATGCAAACATGACCAGACAAAGACTAAGTAAACAGCAGGAATTTAAATACACAATGGTGATGAGCTAAATGGCAAACAGCTGTGATAATAGTTAGTGCCCATGGTAACAGATGAGTGGCGAGAAATTCAAACAAAGGAACGCAGGAACTGAAGAATTACAAACTAAATGTGCATGAACAAAACTAAACTTAACATAATTGCAGCAGAACGTCCCCCTCCGGCAAGGAGCAACCTCGCGCAATAACTGACTAAAAACAGAGGGAGAGATGGAAGTGGCTTAGGAGGTGGACGAAGGAGTGGCGCAGGGATGGAAACAGGGGACTGCGAAGGGATCGTGGTCAGCGGCGACGGAGGAGAGGTGACCAATGAACGATGGCGAAATCCAATGGCACAGACCCAGAGCTTCCGAGTGCCGACAGCCCACGGTGGAGTCGAGGGAGGGAGAAGCCAAGATGTAGATGGGTCGATGGAGCTCAGTGTCGTCGCAGCTGTTCAAAGTATCTCGTCCTTCTGTGTGCAGCCCCCCATTCGGCTGGAGTTTCCCACCTTTGGAGACTTGTGGGAGATGGTGGATGTGCTCACATTCATCGAACACTGCCAAAAACAATACCTGAGAGATTTTGCCTACGACTATCGGGCCCTCTGCCTGAAGTGGAAACCTGATATTTCTGAGGACGAGATGGTGAGCTGTATCCTCAACATCATACCCAGGGTCCCCAGGAACAGCAGCTCAACCACACGCAGCAACATCCCTCCTCTGGATCCCTGTTTCTGTAAAGAAAAAAAAGAGATGAAGGCGGTGGTGGACACAGGAAGTACATTTAACCTGATGCAGAAAAGCCTGTGGATACAGTTAAGAACAAGATCTTCAGATCCTCCCCAAAAGTTCGTCATGGCAGATGGAAAAATTCACCAAGCAATAGATCAGAGGAACATCAGTTACAAGTGGCATAATAAGATATGGAGAGCAAGATACGCTCACATCCAGAGACTTTACCATCGACGAAAGAAAGATGTGGCCCATACCATCCTACAGGGTTGTTGGAGGGAGGCATACAAGGGGACAGATTACAACACCGGCACTGTGGAAGAGTACTGGGCGAAGGTCTATGAGACAACAAGTTCCAGCATACAAAGGAAGGCAGTGCCTAGAAACCTATCCTGTGCAAGGGTAACCCTTATACCTAAGGTGGATCAGCCAACAGATCCAAGTGAGTTCAGGCCCATCGCGATCACCTCTGTACTAGCCTGTGCTCTCCATAATATTGTCACCAAGAGGATAAGGGTGGAGTTCATTTTCTCCCTGATGCAGTACACCTTCCTCCAGAGGGATGGATGTCTAGAAGCATCTACTCTCCTCCATGCTATTCTAAGGAAATTGCACAATGAAATAAAACCACTTGCAGTACTTGTTTTTGGATCTAGCAAAGGCATTCAACACTATCTCCCATGAAGCAATCTTGGCAGCGGCAGGAGCCACGGGAATGCCGCCCCCATTGCTGAGATACCTGGAACACCGATATGGAAATGCTAAATTACCCTTGGTACCAGAATAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU303257 lncRNA downstream 1400 328968 ~ 329192 (-) True G267208
TU303254 lncRNA downstream 4378 325723 ~ 326214 (-) True G267205
TU303239 lncRNA downstream 20706 309626 ~ 309886 (-) True G267190
TU303224 lncRNA downstream 33414 296948 ~ 297178 (-) True G267175
TU303208 lncRNA downstream 46493 283872 ~ 284099 (-) True G267159
TU303329 lncRNA upstream 58170 398942 ~ 399159 (-) True G267273
TU303348 lncRNA upstream 70497 411269 ~ 412146 (-) True G267292
TU303350 lncRNA upstream 72130 412902 ~ 413130 (-) True G267294
TU303366 lncRNA upstream 80167 420939 ~ 421160 (-) True G267310
TU303397 lncRNA upstream 96562 437334 ~ 437563 (-) True G267339
CI01000065_00253168_00255665.mRNA mRNA downstream 74882 252691 ~ 255710 (-) True CI01000065_00253168_00255665
CI01000065_00120723_00133111.mRNA mRNA downstream 197481 120406 ~ 133111 (-) True CI01000065_00120723_00133111
CI01000065_00097164_00097583.mRNA mRNA downstream 233002 96904 ~ 97590 (-) True CI01000065_00097164_00097583
CI01000065_00076766_00091631.mRNA mRNA downstream 238961 76685 ~ 91631 (-) True CI01000065_00076766_00091631
CI01000065_00050903_00055774.mRNA mRNA downstream 274818 50386 ~ 55774 (-) False CI01000065_00050903_00055774
CI01000065_00444905_00447425.mRNA mRNA upstream 103908 444680 ~ 447425 (-) True CI01000065_00444905_00447425
CI01000065_00563411_00579174.mRNA mRNA upstream 222076 562848 ~ 580083 (-) False CI01000065_00563411_00579174
CI01000065_00622545_00624625.mRNA mRNA upstream 281351 622123 ~ 624625 (-) False CI01000065_00622545_00624625
CI01000065_00768127_00769942.mRNA mRNA upstream 426800 767572 ~ 770151 (-) True CI01000065_00768127_00769942
CI01000065_00782736_00793467.mRNA mRNA upstream 441964 782736 ~ 793467 (-) False CI01000065_00782736_00793467
TU303067 other downstream 276205 54287 ~ 54387 (-) True G267025
TU303066 other downstream 284505 43039 ~ 46087 (-) True G267024
TU303798 other upstream 213579 554351 ~ 556828 (-) True G267718
TU303796 other upstream 213696 554468 ~ 556828 (-) True G267718
TU303828 other upstream 281660 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303837 other upstream 441925 783538 ~ 783661 (-) True G267748
TU305637 other upstream 2967671 3308443 ~ 3312404 (-) False G269348

Expression Profile