RNA id: CI01000065_00408239_00434714.mRNA



Basic Information


Item Value
RNA id CI01000065_00408239_00434714.mRNA
length 1714
RNA type mRNA
GC content 0.47
exon number 8
gene id CI01000065_00408239_00434714
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 408148 ~ 435407 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATAAATAAAGGACTCCTGGAGTCGCATTTCCTACTCACACACGACAGAAACAATGTTCAGAGTATTAGATGTATTCTAAGCATACCACAATGAAGAAACCTTCAGCAGATGGTCAGATGAAAAATTCAAAAGACGTACCGAATCTTGTGGAAATCCTAAAATATATGCAATTTGATCAAGGCAGGATTAAAAGAGCCATTGTGCTTGTCAATAAGCTGTTTACCGCCGCCCACGAGCTGCCTTCAGCATCTGAGAGCACTCGTTTCAGCTCATCCCCTGCCGTCTTCCGTCAGCTGTGGGGTTCCCTTGGAGGCGGTTTCCAGAAGGATGACAGGGGACGCCACGTCTTGGTCCGATCAGACCGCATGACGGTGGTATCCTACATAAATCACCAAGGCGGCCTTTCATCCAGTCGCCTCTGCGCGCTGGCAAAGCACCTCTTGGAATGGGCACTGCCCAGGCTGCGATTGCTCAGAGCGTCGCACACACAGGGCAAATTGAATCTGGGAGCAGATATGCTATCTCGGAGCAATGTCCCCTCAGACGAGTGGATGCTCCATCCCCAGACGATTCTCGAAATCTGGGAGATCTTCGGGAGGGCAGAGGTCGACCTCTTCACCTTAGAAGAAAACTCTCATTGCCCAATCTTCTTTTCGAAGGACACAGATGCACTGGCCCACGACTGGCCCAGCATCCTTCTTTATGCTTTTCCCCCTATCAATCTGATACCTCAGGAGCAACCAATGCAACCCCTAATTGCAACTGTTTCTATTTATTACAATCTCTGGAAAACCACAATCTTTTTCTTTGTGATGGTATGTGAGATTCGGCTGGTTGGACTACAGCAACAGCACATCAGTGGTAAACTGGCCTCTTACAGGCAAAGTCATCAGCCCAATGGCAGCGGAGGATTGGAGCTTAAACCAGCATCTTGGGCTGAAGAATTGTTGGATCACACACACGAGGGAACAACGAGGGATGGCTTAGATGACGTGATGACTAGAGAAAGCAGTCTGTAGCATCTGACGAGGTCAGACACTGACTGAGGGAGTGTGTGTGTGCTCTATATAGTGCTGGTGATGAGGGCTAGATGAGTTTCAGGTGTGCATGGTTAGGTTCCAAGGAGGACGCTCTGAAATGCAGTCCGTGACATTACTCCCCCTGCCTGTACGGCGGCTCCAAACAACTTCAGGGGCATGAGAATAAGTGGAACTCTGCTCCACGGTGTCAAACTCCACCAGCACTCCCTCAGGGATGATTCACTGCATCTTGGATTGATGCTATTGGGAACAGATACCCACTTCAGGAATGCCTGCCTCACTAGGTGGGAATAGGTGAAAAAAAGACTCTTGTCCACATACTCCAACCTCAGGGAGGTCACAGGGGAGTTATCCCTTACAAAAGATTACTGCAGTTTTTACATATAGAAAAAAGCATTTTTTTTTGGACACGAAAAAACTGCGATATTGCAGTATAGCTGCAATACAACTGCAGTTTTACTGCTGTTGAACTTCAATGTACTGCAGTTGTACTGTGATTATACTTCATTATACTGCAAATCTATGGTTGTGCTTAATTATATTGCAGTTATACTACTTTGTACTGCAGTTTTACTGCAGTTGTACTTCAATATACTGCAGTTCTTTTTTGTAAGGGATTCCCCACTTAAAAACCCCAATACACTGGGGGAGAGCAGCTCAACCCTGACTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU303303 lncRNA upstream 40480 367465 ~ 367668 (+) True G267248
TU303300 lncRNA upstream 43484 364456 ~ 364664 (+) True G267245
TU303286 lncRNA upstream 55672 352125 ~ 352476 (+) True G267231
TU303259 lncRNA upstream 76589 331182 ~ 331559 (+) True G267210
TU303248 lncRNA upstream 87278 320604 ~ 320870 (+) True G267199
TU303394 lncRNA downstream 855 436262 ~ 436600 (+) True G267336
TU303499 lncRNA downstream 72179 507586 ~ 507799 (+) True CI01000065_00506921_00509678
TU303500 lncRNA downstream 72775 508182 ~ 508413 (+) True G267438
TU303503 lncRNA downstream 76283 511690 ~ 512132 (+) True G267441
TU303517 lncRNA downstream 155608 591015 ~ 591219 (+) True G267454
CI01000065_00390457_00395371.mRNA mRNA upstream 11997 390457 ~ 396151 (+) True CI01000065_00390457_00395371
CI01000065_00268067_00268655.mRNA mRNA upstream 139360 268067 ~ 268788 (+) True CI01000065_00268067_00268655
CI01000065_00008351_00023809.mRNA mRNA upstream 383810 8351 ~ 24338 (+) True CI01000065_00008351_00023809
CI01000065_00001128_00004874.mRNA mRNA upstream 402964 1128 ~ 5184 (+) True CI01000065_00001128_00004874
CI01000065_00466096_00487259.mRNA mRNA downstream 30569 465976 ~ 487278 (+) True CI01000065_00466096_00487259
CI01000065_00491304_00503042.mRNA mRNA downstream 55741 491148 ~ 503458 (+) True CI01000065_00491304_00503042
CI01000065_00506921_00509678.mRNA mRNA downstream 71514 506921 ~ 510257 (+) False CI01000065_00506921_00509678
CI01000065_00517483_00553268.mRNA mRNA downstream 82076 517483 ~ 553738 (+) True CI01000065_00517483_00553268
CI01000065_00581819_00588773.mRNA mRNA downstream 145468 580875 ~ 588779 (+) True CI01000065_00581819_00588773
TU302970 other upstream 363482 43038 ~ 44666 (+) True G266932
TU303494 other downstream 346876 782283 ~ 782879 (+) True G267432
TU303653 other downstream 646746 1082153 ~ 1082655 (+) True G267577
TU304676 other downstream 1803752 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 2173500 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 3023550 3458957 ~ 3462928 (+) True G269181

Expression Profile