RNA id: CI01000065_00466096_00487259.mRNA



Basic Information


Item Value
RNA id CI01000065_00466096_00487259.mRNA
length 949
RNA type mRNA
GC content 0.48
exon number 3
gene id CI01000065_00466096_00487259
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 465976 ~ 487278 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACATTTAATGAGAGACTTGGATGACGCTGCTGCATTGGATGTAGAGGCTGTTCGTGAGCTGTGCAGAGCATCGGACTTGCTGCTAAGAACTACCTAGCACACTGATGCAGCATGTAAGCAATGGCTGCTCTGGAATGCCATTTGGGCCTCACCTTAACCAAGACCAGAGCCACATCAGTGAGTGCACCCATGCAGAGAAGTGAGTGTCTGCCAAGCGGCCACTTGGGCAGCAATAGAGAGCCTCGTGTGCCAGCTCGAAACACAGGTGTCCTCCTGTTCCGGTTGTCCCTGGCTCCTCAGACTTTTTCGAAGTGCATCTATGTGGCTCTGATAACGAGGCTTCAGAATATTCAATTCATGAATTATCTCGATGATTGGCTGGTCCACTCAGAGTGTCCAGCAGCACAGTATCAGGATATTGTCCTCAAGCTTTTGAAGGACTTGGGGCTGCGAGTCAATTGGGACAAGAGCATTCTGTTGTCACACCAACAGATATGTTTTTTGGCTCTAGAGTTGGACTCTGTGGCAATGCGGGCGAGCCTTGCTTCAGCTGAAATTGCTATCACTTTGGCAGTTTGTACAGATGATCAAGGCAATGATACATCTCGAGCGCAACGATTAGAGCACGTGATCCAAATGAACCGCTTTGAGTTGCCCATCTCCTCCTTTAAGAAGATCTCTGGCTGCGCTCGACCCTCTTGTGACGTAACAGCTAGCAGACTACGGTGCGCCGTTTGTGACCAAGAGCAGAACGCGCGAAGTGAGGGAATACGAGCAACATTTCAGCACTCTAGCGAAAACCCGCCTTTCCCGTGTTTCAATTGGACGAAAGCAAGAAACTGGCCTTTTGATTGGACAAAACTCACGCCAGCAACAATCATGCTAATAGGAAGTAGAGTTAAACTGTTTCATGTCAGAGAGAAAAGATAAACATAGCCAAAAGGAAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU303394 lncRNA upstream 29376 436262 ~ 436600 (+) True G267336
TU303303 lncRNA upstream 98308 367465 ~ 367668 (+) True G267248
TU303300 lncRNA upstream 101312 364456 ~ 364664 (+) True G267245
TU303286 lncRNA upstream 113500 352125 ~ 352476 (+) True G267231
TU303259 lncRNA upstream 134417 331182 ~ 331559 (+) True G267210
TU303499 lncRNA downstream 20308 507586 ~ 507799 (+) True CI01000065_00506921_00509678
TU303500 lncRNA downstream 20904 508182 ~ 508413 (+) True G267438
TU303503 lncRNA downstream 24412 511690 ~ 512132 (+) True G267441
TU303517 lncRNA downstream 103737 591015 ~ 591219 (+) True G267454
TU303518 lncRNA downstream 104244 591522 ~ 591883 (+) True G267455
CI01000065_00408239_00434714.mRNA mRNA upstream 30569 408148 ~ 435407 (+) True CI01000065_00408239_00434714
CI01000065_00390457_00395371.mRNA mRNA upstream 69825 390457 ~ 396151 (+) True CI01000065_00390457_00395371
CI01000065_00268067_00268655.mRNA mRNA upstream 197188 268067 ~ 268788 (+) True CI01000065_00268067_00268655
CI01000065_00008351_00023809.mRNA mRNA upstream 441638 8351 ~ 24338 (+) True CI01000065_00008351_00023809
CI01000065_00001128_00004874.mRNA mRNA upstream 460792 1128 ~ 5184 (+) True CI01000065_00001128_00004874
CI01000065_00491304_00503042.mRNA mRNA downstream 3870 491148 ~ 503458 (+) True CI01000065_00491304_00503042
CI01000065_00506921_00509678.mRNA mRNA downstream 19643 506921 ~ 510257 (+) False CI01000065_00506921_00509678
CI01000065_00517483_00553268.mRNA mRNA downstream 30205 517483 ~ 553738 (+) True CI01000065_00517483_00553268
CI01000065_00581819_00588773.mRNA mRNA downstream 93597 580875 ~ 588779 (+) True CI01000065_00581819_00588773
CI01000065_00605004_00618190.mRNA mRNA downstream 117133 604411 ~ 619124 (+) True CI01000065_00605004_00618190
TU302970 other upstream 421310 43038 ~ 44666 (+) True G266932
TU303494 other downstream 295005 782283 ~ 782879 (+) True G267432
TU303653 other downstream 594875 1082153 ~ 1082655 (+) True G267577
TU304676 other downstream 1751881 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 2121629 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 2971679 3458957 ~ 3462928 (+) True G269181

Expression Profile