RNA id: CI01000065_00563411_00579174.mRNA


Basic Information

Item Value
RNA id CI01000065_00563411_00579174.mRNA
length 2285
RNA type mRNA
GC content 0.45
exon number 7
gene id CI01000065_00563411_00579174
representative False

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 562848 ~ 580083 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACAGCGTAGTAAACATACGCGTGAGGTTTCATCGCCCCACCCCACTGAATAACACGGAGCTTCAGAGAAGCAGGAAGTGCTGGTGGATCATCATCCGAACCACATGCTGCTGAAACACAAAAACAGAGCCTACAACATTGTATTTTGCGCCGATGAGGATTTTTTGATGAACTGCTGAGGCGAGCAGCCGAAACCTGCAATCTACACATCGCGTGGACGCGTTTGGGCAAACAAGTACGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGCGCGTCAAATCACGACATCTTATTTGCTGTCGTCGCCTTTGCTTGAAACAAGCTGTATCAGTGCTCAGTGTGCTTCCTCGCTGATCAAATGGTGTAGTTATTTCTGTCAGGACTGGACTCCTGTATTATGTAACCTGTCAGGGTTTGGTCACTTCCAGATGTGATGATGTTACTGTTAGCCACTGCATTTCTGTCATTGTAACTCAACATTGTCACAGCGCGACATTCACGTGAACAGCGAGTAACGTTATTTGTTTTTCCGTGTCGCCAGAGGCCCCGATTTGAGGCAAAAATATCTAGGTGATGTCACTGTTCATTTGCATAAACTACACTAAACTAGCGCGTGTCGAGCAGATGTGAGGAGCAAGCACATTGTGAAAGTAATCTTTTTAGTTATTATTGTTTTGTGTTGACAGATTATTAACAGGAAGGCATACTTTTCCCCATCGAGTGCCCTCCAGATGTTTTCAACCTGCGAACAATTGCAGAACTTAAAAGATGTAAAAGCTTCAAGGCTTTTATAATAATCGGATATTGCTGAAGACACTTTAGTCTAAGGTTTAAGGTGAATATACGACTGTGAACTGTCAGTTTCCGCGTTTTGGTTCTTGTTCAGATGGAAACTAATGTGGGCGAATGGGCTGCAGTCGATGTGTTGGGAAACTACAGGCGGTGTCTACACTCGATAGTGGTCGAGTGAGCATGGGCCAGCATCTTGGAAAACGTGAACCACTTTCTGTTTCCAAGGGATCCTCGACAGTATCTGATCACATGTCAGCAGCCTCGCCAGAGGCTCAGGATGAGGTGTTTGGGTTTATAACCACTGAAAAATTGTGTCCAATGAGCTGCTCAATCTCTGAAACCTTTATGAGAGGGGGAGGCGGACCTCAACCAGAACAATGGCTGCTCCAGCAAGAGTCCAGCGGTGACCGACTCCATGAACGCCGCAGTAGATCACAGCAGCTGGAAGCAGCCGAGCACAGCCGACCCCGACACCTCAGAGCCCCGCCCACACTTGGTCCGCCTCTTTTCTCGAGATGCCCCGGGCCGCGAGGACAACACCTTCAAGGACCGCCCCTCGGAGTCGGACGAGCTTCAGACCATCCAGGAGCACGGCGGCAGTGGCGGCTCAGACAAACACTTGCTATGGCGTCCGCAAGCTCTTCCCAGTCAACCTTCAGGCTGGGCCGCAGCAAGAAGAGCCCTACTGTCATGGATCAGATCGGAAAGTTCTTCGGAGGGGATAAAAAGAAGAAGGGAAAGCAAATGACACAGCAAGTGAAAAGTTCAGCAAATATGGTACAGTACCTGTGGGATATTGAGTGGATTTCCACATATCTTTTCATACAGTATATGCGACTGGTGAATATCATATATTTTAGAATCCAGTCATCTTGTAAGGAAGCGCCTCAGGGTTTTTCACGGTACGGACAGAGGCTTGGTTTCTAAAATGAATTTGCATAGTTTTGGAAATGATCTTTAATTATCTTTATTATTGCGTGTGTAATTATGCAATTTCTAGAGCCTTAAATTTTAAGACAAAAAAGAGGGAGGTGAATCATTTTTCCTTCTAAAACAAAGATATTTAAGCTGTTTGGGAAACTTTTTGAAATTAGACCTCTGTGATGTGTGTGAGTTTATAGTTGTGACCTTATTTTTAAAGTGCCAAATGATGGTTAAAGCTGATGTAACAGAATTACTGACATTGATTATAGTTCATGTTTATGTGGAGAAATAATGTGAGCGAGACTGAGATTGTGATGGTTCCAGCTGTATAATAGTTTGTCTGTTGATGTCTTAAATACGCCTCAGGGGAGCTCGTCTCATCTCGTCTCGTCTCTCTCTCTGTAACAGTGTGATCTTTAAGTGTTAATGCCGCACTATTAACCCTACGGATTGTGTTTCGTTTGTAACAAGAGCTTGTGTAACCTACCTATTCCCGAACAACCCTGACGCTGTTCCCTCGCCTGATCCTGTCTTGAGCTTTTTCACATTTGCTTGATTAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303821 lncRNA downstream 13369 548000 ~ 549479 (-) True G267739
TU303809 lncRNA downstream 37264 524879 ~ 525584 (-) True G267728
TU303802 lncRNA downstream 50098 512513 ~ 512750 (-) True G267722
TU303801 lncRNA downstream 50680 511694 ~ 512168 (-) True G267721
TU303473 lncRNA downstream 58367 504275 ~ 504481 (-) True G267411
TU303865 lncRNA upstream 11459 591542 ~ 591749 (-) True G267770
TU303866 lncRNA upstream 14539 594622 ~ 598770 (-) True G267771
TU303873 lncRNA upstream 50121 630204 ~ 630439 (-) True G267778
TU303876 lncRNA upstream 53499 633582 ~ 637869 (-) True G267781
TU303887 lncRNA upstream 71466 651549 ~ 651778 (-) True G267786
CI01000065_00444905_00447425.mRNA mRNA downstream 115423 444680 ~ 447425 (-) True CI01000065_00444905_00447425
CI01000065_00330696_00340165.mRNA mRNA downstream 222076 330592 ~ 340772 (-) True CI01000065_00330696_00340165
CI01000065_00253168_00255665.mRNA mRNA downstream 307138 252691 ~ 255710 (-) True CI01000065_00253168_00255665
CI01000065_00120723_00133111.mRNA mRNA downstream 429737 120406 ~ 133111 (-) True CI01000065_00120723_00133111
CI01000065_00097164_00097583.mRNA mRNA downstream 465258 96904 ~ 97590 (-) True CI01000065_00097164_00097583
CI01000065_00622545_00624625.mRNA mRNA upstream 42040 622123 ~ 624625 (-) False CI01000065_00622545_00624625
CI01000065_00768127_00769942.mRNA mRNA upstream 187489 767572 ~ 770151 (-) True CI01000065_00768127_00769942
CI01000065_00782736_00793467.mRNA mRNA upstream 202653 782736 ~ 793467 (-) False CI01000065_00782736_00793467
CI01000065_00843437_00865598.mRNA mRNA upstream 263349 843432 ~ 865598 (-) True CI01000065_00843437_00865598
CI01000065_00869870_00870423.mRNA mRNA upstream 288355 868438 ~ 870423 (-) True CI01000065_00869870_00870423
TU303067 other downstream 508461 54287 ~ 54387 (-) True G267025
TU303066 other downstream 516761 43039 ~ 46087 (-) True G267024
TU303828 other upstream 42349 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303837 other upstream 202614 783538 ~ 783661 (-) True G267748
TU305637 other upstream 2728360 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 2728705 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 2728705 3308788 ~ 3312480 (-) True G269348

Expression Profile