RNA id: TU303828


Basic Information

Item Value
RNA id TU303828
length 897
RNA type TUCP
GC content 0.52
exon number 3
gene id CI01000065_00622545_00624625
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 622123 ~ 624657 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTTATGAGTGCGAAGAACACGTTACATGCAATGACTCCAGCACAGCCGAGGATTATCCTGTTATTCAGCGGGAAGCGGAAGTCGGGGAAGGATTATGTGACAGATTTACTTAAGCACAGGTGAGATGTGCAGCTCTGACAGTGTCGCGCGCAGCTGAACTGCATGAATACAGATGCTGTTGTTGTTCTGACCGCAGGCTGACCGCAGAGATGTGCTGCATACTCAGACTGTCTGCGCCCCTCAAACTGCAGTATGCACAGGATCATAATCTGGACTATGAGGAGCTGTTGGGCTGCGGTCAGTATAAGGAGGAATATCGAGCCGACATGATCCGCTGGGGTGAGATGAAGAGACGGCAGGACTCGGGCTTCTTCTGCAGACTGGCCATCCAACACGCGGCGCGGCCCGTCTGGATCATCAGTGACTGCCGGAGGAGGTCGGACGTGCAGTGGTTCCGTCAGGAGTTTCCCGATCTCTGTGTGTGTGTTCGGGTGGAGGCGTCGGAGCAGACCAGATCTCAGAGGGGCTGGAGATTCACCGCAGGTAAATGAAACGCATTATAACAGACACGAGAGGTCAGAGGATGATCTAATGCCGTGTTCTGTCCAGGTGTGGACGACGCCGAGTCCGAGTGCGGATTGGACGAGGGTGTGAAGTTTGACTGGATCATCAGGAACGACGGAGACGATGATGTTCTGGAGAAACAGCTGGAGGAGCTGCTGTCACTGGTCACGTCACGACTGGACTCACACACACTCAATGACATGAAAACACAGCAATGACAACACGAGAACTCGTTTCTTTCATCTGCTCACTGGAGGACTAGACTCTTCTGCTTTATTATCTACACTTCCTGTCATCATGTGCTTCATGGTGTTCCAAACCAGCTTTAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303866 lncRNA downstream 23662 594622 ~ 598770 (-) True G267771
TU303865 lncRNA downstream 30683 591542 ~ 591749 (-) True G267770
TU303821 lncRNA downstream 72953 548000 ~ 549479 (-) True G267739
TU303809 lncRNA downstream 96848 524879 ~ 525584 (-) True G267728
TU303802 lncRNA downstream 109682 512513 ~ 512750 (-) True G267722
TU303873 lncRNA upstream 5547 630204 ~ 630439 (-) True G267778
TU303876 lncRNA upstream 8925 633582 ~ 637869 (-) True G267781
TU303887 lncRNA upstream 26892 651549 ~ 651778 (-) True G267786
TU303889 lncRNA upstream 30759 655416 ~ 655634 (-) True G267788
TU303890 lncRNA upstream 32474 657131 ~ 660848 (-) True G267789
CI01000065_00563411_00579174.mRNA mRNA downstream 42349 562848 ~ 580083 (-) False CI01000065_00563411_00579174
CI01000065_00444905_00447425.mRNA mRNA downstream 175007 444680 ~ 447425 (-) True CI01000065_00444905_00447425
CI01000065_00330696_00340165.mRNA mRNA downstream 281660 330592 ~ 340772 (-) True CI01000065_00330696_00340165
CI01000065_00253168_00255665.mRNA mRNA downstream 366722 252691 ~ 255710 (-) True CI01000065_00253168_00255665
CI01000065_00120723_00133111.mRNA mRNA downstream 489321 120406 ~ 133111 (-) True CI01000065_00120723_00133111
CI01000065_00768127_00769942.mRNA mRNA upstream 142915 767572 ~ 770151 (-) True CI01000065_00768127_00769942
CI01000065_00782736_00793467.mRNA mRNA upstream 158079 782736 ~ 793467 (-) False CI01000065_00782736_00793467
CI01000065_00843437_00865598.mRNA mRNA upstream 218775 843432 ~ 865598 (-) True CI01000065_00843437_00865598
CI01000065_00869870_00870423.mRNA mRNA upstream 243781 868438 ~ 870423 (-) True CI01000065_00869870_00870423
CI01000065_00906591_00915144.mRNA mRNA upstream 280735 905392 ~ 915144 (-) True CI01000065_00906591_00915144
TU303796 other downstream 42405 554468 ~ 556828 (-) True G267718
TU303798 other downstream 58218 554351 ~ 556828 (-) True G267718
TU303067 other downstream 568045 54287 ~ 54387 (-) True G267025
TU303066 other downstream 576345 43039 ~ 46087 (-) True G267024
TU303837 other upstream 158040 783538 ~ 783661 (-) True G267748
TU305637 other upstream 2683786 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 2684131 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 2684131 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 3149223 3773880 ~ 3774294 (-) True G269679

Expression Profile