RNA id: CI01000065_00768127_00769942.mRNA



Basic Information


Item Value
RNA id CI01000065_00768127_00769942.mRNA
length 1337
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000065_00768127_00769942
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 767572 ~ 770151 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATCATCCTATCTGAGTCTCTGTAACACCTTTTGAGAGTAACTGTCTATTTTTTTTTCTTTTTTTTTTTTTCTTCTTGTTTATTCAGCACATCACAATTAAGCAGAGAGGGCAAGAGCCTCAGCCTCAACGCTGCCATGCAGATGCTACTTTATTCACTTGCCCTTTCTGCACAACTGATGCATGTAAGCCAAGAAAATATCATCAAATAATGGCCCATATAGCTGGACATAAACTGAGCGCGGTTGAATATGGAGATGATGTTATATACAGCTGTAACAGCTGTGGTGAAAAGGCCAGACATTTTCACTGCTGCCAGTGTCCACAGACCTACTTCAATCAAGGTGCTCTAAAGAGGCATCTTTGCAACACTCATCCTATAGCTACTTGCGCTCCAGAACCACAACCTGTAGGTCGTCCACTACAAGAACCTCCTTTGCAGCAACCAGCACCTCGTCCACTGGAATTAGCAGCTCAGCGAGTGATTGTTAAAAGAAAGCAAATCTCTGTGCAGTGTCCTCACTGCAGGGTCAATCTGAATTCCAAAAATTTAAAGATGCACATTAAGCGGAAACATCATGAAGCCATGCATCCTGTAACTCCAACTTGGGATTCATCCCACAAGGTTATCTGTGACATTGATATTTGTAAAAGCTGTGTTGAAACGGCACCAAGGAGTGAACTTTTGGTTACACAATGTGTGTCTCTAAGCTCAGTAGACTACTCCTGTGCTGCTGAACCTAGTGAAGATTTATCAGAGGACATGTTGACTGAGATGGAGTAAAAACCATTTGGGGGAAAGAAAAACAATGTTTTAAGTAGCAAAATTAGGATAACGGTAAAGGTGCCACATTTACTAGCCTTGTTACCATTGGAGGCCCCAACTACATATATAAAGGTGGCACATTACTGTCTTGGTGAATTACAATGTCACTGTAAACTGTTGGTACTGCCCTTGTAGCAAAGGTAGAAAATCATGTCTGTACCAGAGTATTGAAAAGTGGAGTCTCTTTCAAATGAAGAAGCAGCTCTTCAAAAACCAAAAGCAAAGGAAGGGATTGAATCAGCACGAGGACCTGTCTAGCCAACAGTGGTAATATCCTCCACAGCAGTCGTTCCAAAAATGGTTGCCCGCAACTGGCTAGGAGAAGAAAAACTGAGACATCTCAGCCCAAAAGAAAAACCGATTCTGACTCACAACGAACTGGCACTACAAATAGATGATCCTGCAGATATCAGTGGACACTGCCACCTCCTTGCTAGTGTGCAATATGTTAATGAAGAGTTTATTGCTGTTACAAGGGCGGGCATGGGGGTGTTTTAAATGAAAAAGATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU303893 lncRNA downstream 100669 666609 ~ 666903 (-) True G267791
TU303892 lncRNA downstream 105889 661271 ~ 661683 (-) True G267790
TU303890 lncRNA downstream 106724 657131 ~ 660848 (-) True G267789
TU303889 lncRNA downstream 111938 655416 ~ 655634 (-) True G267788
TU303887 lncRNA downstream 115794 651549 ~ 651778 (-) True G267786
TU303952 lncRNA upstream 26105 796256 ~ 796967 (-) True G267850
TU303954 lncRNA upstream 27875 798026 ~ 798242 (-) True G267852
TU303955 lncRNA upstream 28704 798855 ~ 799073 (-) True G267853
TU303847 lncRNA upstream 40611 810762 ~ 811315 (-) True G267752
TU303958 lncRNA upstream 55232 825383 ~ 986069 (-) True G267856
CI01000065_00622545_00624625.mRNA mRNA downstream 142947 622123 ~ 624625 (-) False CI01000065_00622545_00624625
CI01000065_00563411_00579174.mRNA mRNA downstream 187489 562848 ~ 580083 (-) False CI01000065_00563411_00579174
CI01000065_00444905_00447425.mRNA mRNA downstream 320147 444680 ~ 447425 (-) True CI01000065_00444905_00447425
CI01000065_00330696_00340165.mRNA mRNA downstream 426800 330592 ~ 340772 (-) True CI01000065_00330696_00340165
CI01000065_00253168_00255665.mRNA mRNA downstream 511862 252691 ~ 255710 (-) True CI01000065_00253168_00255665
CI01000065_00782736_00793467.mRNA mRNA upstream 12585 782736 ~ 793467 (-) False CI01000065_00782736_00793467
CI01000065_00843437_00865598.mRNA mRNA upstream 73281 843432 ~ 865598 (-) True CI01000065_00843437_00865598
CI01000065_00869870_00870423.mRNA mRNA upstream 98287 868438 ~ 870423 (-) True CI01000065_00869870_00870423
CI01000065_00906591_00915144.mRNA mRNA upstream 135241 905392 ~ 915144 (-) True CI01000065_00906591_00915144
CI01000065_01017206_01031155.mRNA mRNA upstream 246545 1016696 ~ 1031678 (-) True CI01000065_01017206_01031155
TU303828 other downstream 142915 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 187545 554468 ~ 556828 (-) True G267718
TU303798 other downstream 203358 554351 ~ 556828 (-) True G267718
TU303067 other downstream 713185 54287 ~ 54387 (-) True G267025
TU303066 other downstream 721485 43039 ~ 46087 (-) True G267024
TU303837 other upstream 12546 783538 ~ 783661 (-) True G267748
TU305637 other upstream 2538292 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 2538637 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 2538637 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 3003729 3773880 ~ 3774294 (-) True G269679

Expression Profile