RNA id: CI01000065_01017206_01031155.mRNA



Basic Information


Item Value
RNA id CI01000065_01017206_01031155.mRNA
length 1735
RNA type mRNA
GC content 0.44
exon number 7
gene id CI01000065_01017206_01031155
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 1016696 ~ 1031678 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGCATGGCGTCTTTACTCTCCTTTTGAACATGTTGAGACCATTTTATTTAGAAAGATCTAAAAATATCAAGTTAATGAAACAAATACAGTTAGCAATTATTCAAAATATCTCATTATGACAAATTATATATCCTAATAAAGGCCTTAATATGCCTAAATGATAATGCTAAATTTGACCCTGTCAGTGCGACACTAGTGGTCACCTTTTCCAAAGTGTCGAGCGGTCATCTCATGTTGTTGTGGTCACCTTGTGTGGAAGAGTTTGGGGGCCGGACTTTAGCGCAGTGATGGTCTCTCTGCGTGATTGGTCTGTTTTGGACTGAGGGGGGCATCCATTGAGGAATGTGTTGGTCATCCTGGAGGGGAGAGTGATTGGGAATCACGTGGACTTGACCGAAACTGTGAGAGAGGGGGTCGACCATGAGAAGCATCAGTCCAGAGCAGTGACCGATCCACTGAGGGATCACCTGGAGAACCGAGATTAACGCAAACAACCTCAGGAGAAAGGCACAGAGGGGAACCCATGGCAGAGGGTATGTCATTTGTTTTTGGAAGTTCTGGCCCTCTTCATCAAGGAGGGTGTACAAAAACAGAGGAGGAGGAGGGGCAGGCCCCCGAGGAAGACCCTCAGTCGTACCATGGCGTGGGCGTGTGCAAGTGGTTCAATGTTCGGATGGGTTTTGGATTCCTGTCCATGACCACACGAGATGTAATTGCATTGGTCCACGCTGGTATGGCTAGTATTTCTCTCTCAACTCTCATTTCCCATAGTAAACTGCACATGGAGGGTTTCCGCAGTCTAAAGGAGGGCGAGGCTGTTGAGTTCACATTCAAGAAGTCCTCCAAGGGTCTGGAGTCTCTGCGGGTGACGGGTCCTGCAGGAGCTCACTGTGTGGGCAGTGACAGGAGACCCAAAGGCAAGAGCGTCCAGAAACGCCGGGCCAAAGGAGACAGCTTTTTTCAAACAAAGGCCGTCATTGCCTTCTGCACACTCCGCCTGCTGTCCGTCCGTGCCGCACACTGTGCTGATGAAGGCCTCGGGTGTTATAATTGTGGTGGTCTGGACCATCATGCCAAAGAATGTAAGCTGCCTCCCCAACCCAAAAGATGCCATTTCTGCCAAAGTGTCACGCACATGATTGCCAACTGCCCCGCCAAAGCCCAGCAGTCGTCACAGGGCTCTCAGGGAACGTCTGCAGACGGCACTGTAATCGGCCTCATCTGACAGATTTATGTTTTATTCTTTAGTTGCTATTTAACCTATAAATGCCTTTCACTTTAGCAGTGTTGAATCATGACTCTGAACTCAGGGAGCGTATCAAGCAGTGTGAGGTAGACATGATTTTACATTAAGTGATAAGAATTATTTTATTATAGTTCCATGTACCATCATAATTATTGTAATTATTAACTTTCTGAGATTTGTGGATCAAACAGGAATGTATATCCGGTAACACTTTATTTTACGGTGTCCTTGTTACACATTACATGAAGTTACTATAGTAATAACTATAAATTATGCATAATTACATGCACAAGTACACACAGTTAACTAATATTTCTCAGTACTCAAATGTATAATTACACTGTAACAAGGACACCTTAAAATAAAGTGTAACTGTATACCCTAACTATGCTGTGGTTGCCTCCTACATAAACTGGAAACATTGCCATTATCTAATCCATTCCTTTATGCAATTATGTTTGAGTTCTTGTTTTTGGCATATTTAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU303958 lncRNA downstream 30627 825383 ~ 986069 (-) True G267856
TU303965 lncRNA downstream 136690 877790 ~ 880006 (-) True G267863
TU303847 lncRNA downstream 205381 810762 ~ 811315 (-) True G267752
TU303955 lncRNA downstream 217623 798855 ~ 799073 (-) True G267853
TU303954 lncRNA downstream 218454 798026 ~ 798242 (-) True G267852
TU304030 lncRNA upstream 4411 1036089 ~ 1036352 (-) True G267926
TU304049 lncRNA upstream 47404 1079082 ~ 1079359 (-) True G267944
TU304051 lncRNA upstream 51320 1082998 ~ 1083361 (-) True G267946
TU304063 lncRNA upstream 153395 1185073 ~ 1185374 (-) True CI01000065_01173590_01277821
TU304104 lncRNA upstream 299392 1331070 ~ 1331343 (-) True G267997
CI01000065_00906591_00915144.mRNA mRNA downstream 101552 905392 ~ 915144 (-) True CI01000065_00906591_00915144
CI01000065_00869870_00870423.mRNA mRNA downstream 146273 868438 ~ 870423 (-) True CI01000065_00869870_00870423
CI01000065_00843437_00865598.mRNA mRNA downstream 151098 843432 ~ 865598 (-) True CI01000065_00843437_00865598
CI01000065_00782736_00793467.mRNA mRNA downstream 223229 782736 ~ 793467 (-) False CI01000065_00782736_00793467
CI01000065_00768127_00769942.mRNA mRNA downstream 246545 767572 ~ 770151 (-) True CI01000065_00768127_00769942
CI01000065_01037474_01041412.mRNA mRNA upstream 5486 1037164 ~ 1041412 (-) True CI01000065_01037474_01041412
CI01000065_01103779_01119916.mRNA mRNA upstream 71866 1103544 ~ 1120757 (-) True CI01000065_01103779_01119916
CI01000065_01148241_01167007.mRNA mRNA upstream 116196 1147874 ~ 1167007 (-) True CI01000065_01148241_01167007
CI01000065_01173590_01277821.mRNA mRNA upstream 141837 1173515 ~ 1277821 (-) False CI01000065_01173590_01277821
CI01000065_01297837_01321136.mRNA mRNA upstream 266121 1297799 ~ 1321136 (-) True CI01000065_01297837_01321136
TU303837 other downstream 233035 783538 ~ 783661 (-) True G267748
TU303828 other downstream 392039 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 436669 554468 ~ 556828 (-) True G267718
TU303798 other downstream 452482 554351 ~ 556828 (-) True G267718
TU303067 other downstream 962309 54287 ~ 54387 (-) True G267025
TU305637 other upstream 2276765 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 2277110 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 2277110 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 2742202 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 2761445 3807558 ~ 3810160 (-) False G269656

Expression Profile