RNA id: CI01000065_01037474_01041412.mRNA



Basic Information


Item Value
RNA id CI01000065_01037474_01041412.mRNA
length 1441
RNA type mRNA
GC content 0.48
exon number 7
gene id CI01000065_01037474_01041412
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 1037164 ~ 1041412 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGCCAATGTTACAGCGGTTATACGCTCAGTCGCCGTGTCTGGTGCATCCTGACCGCCTGCTGTGAACAGGGGACAGATGAGGTGAAGAAGCTTCAAGACAGGGACGGTGAGACAGGGAGAAGCAGCTCAGAGTTGCAGAAACAGGCTAGCACATTTTCATATTTCATAAGAGAGACAAGTGAAGAAGTGCAGGCAGGCAAGCAGGAAGCTGAAACCAACCAGGCTAACCCGAAGCTCACTGCAGTGCAGCAGCTCACCAACAAAACGCTACGGTTCCAAGAAAAGTGGTACTGTGAATTTCCTTGGCTCCACTACAGTCCAGGAGTCAATGGAATCCTATGTTTTTTTTTCTGTGCTCAAGCTTTTGGGCATGAAAATTCAAATTTGGCCAAGAATGCAGATCCAACATTTGTCAAAACTGGTTTCCGAAACTGCTCTTGGCACGCCAGGGAGCTGCTCTTAGGGGCCATGCAGCTGAAGAGGGTCTTCTTGGGGTTTTACGAAGTCTCAAGCACAACTGGGGAAAACCTAGCAAAAGTTTCCACAGATGTGTTGTTGTGCTTGAATCTTCTGCTGTCTGGTCTGCGTGGGCAAACATATGATGGAGCGGCGAACATGTCAGGCAACAGAAAGGGAGCACAGGCCAGGATGAGGGAGATGCAGCTGCTGGCTTTGTATGTACACTGTGGCGCTCACTGTGCAAATCTGGACATGGTCCAAGCAGATGCCTCAAACACTGGTGTGACAGAAAGAGGGCTGCTGGAGAGATTTGGAAAAGGTACCACAGTTTTAGGACTCATGATGGCCACTGAAGTTATCCAGGAGCTGGAGTGCCTTAATTGCACACTGCAGAAACAGAAACAGTGTTTGGTGGACATCCAGCTGAAGGAGAGGTTTGATCAGGGTGGTCTGAAAACACCAGTGAAGCTGGAGGAAGCCCTCCTAACTGGGCAGATGGACACTGCTGTGGTGGACCAGTATTCTGAATTAAACCAACGGTCACTGAAGGTGCAGCTGAACATTTTTAAGCTCCAGTACATAAACACAAACACTTCAGAGGCCGCAACTATTCAGAGGAATCAGCTGCCTGAAGTCCGTGGCCTTTTCAATCAAGTGGAAGCACTTGTATGACTTCTTATGGCTGTTCCTACTGCCTCTGCTGAAGCAGAGAGGAGCTTCAGTGCTCTGAGGAGGTTGAAGATCTGGCTGAGAAGCACAATGTGTCAGATTCGCATTAACAATGTAGCAGTCTGTCACATTCACAAAGAAATACTGGATAAAGTCAGCAAGGAAAACATTTGCCAGGAGTTTATCCTTGCGAATGAGTACAGGAAGCATGTGTTTGGAGGAGACAGGACAGTATAGAAGGGTGGATTAGGATGCATGGAGAGATGGGATTGAATGGATAGATGGAGGACAATGAAAAGTTCTTTATATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU304030 lncRNA downstream 812 1036089 ~ 1036352 (-) True G267926
TU303958 lncRNA downstream 51095 825383 ~ 986069 (-) True G267856
TU303965 lncRNA downstream 157158 877790 ~ 880006 (-) True G267863
TU303847 lncRNA downstream 225849 810762 ~ 811315 (-) True G267752
TU303955 lncRNA downstream 238091 798855 ~ 799073 (-) True G267853
TU304049 lncRNA upstream 37670 1079082 ~ 1079359 (-) True G267944
TU304051 lncRNA upstream 41586 1082998 ~ 1083361 (-) True G267946
TU304063 lncRNA upstream 143661 1185073 ~ 1185374 (-) True CI01000065_01173590_01277821
TU304104 lncRNA upstream 289658 1331070 ~ 1331343 (-) True G267997
TU304209 lncRNA upstream 324564 1365976 ~ 1366304 (-) True G268087
CI01000065_01017206_01031155.mRNA mRNA downstream 5486 1016696 ~ 1031678 (-) True CI01000065_01017206_01031155
CI01000065_00906591_00915144.mRNA mRNA downstream 122020 905392 ~ 915144 (-) True CI01000065_00906591_00915144
CI01000065_00869870_00870423.mRNA mRNA downstream 166741 868438 ~ 870423 (-) True CI01000065_00869870_00870423
CI01000065_00843437_00865598.mRNA mRNA downstream 171566 843432 ~ 865598 (-) True CI01000065_00843437_00865598
CI01000065_00782736_00793467.mRNA mRNA downstream 243697 782736 ~ 793467 (-) False CI01000065_00782736_00793467
CI01000065_01103779_01119916.mRNA mRNA upstream 62132 1103544 ~ 1120757 (-) True CI01000065_01103779_01119916
CI01000065_01148241_01167007.mRNA mRNA upstream 106462 1147874 ~ 1167007 (-) True CI01000065_01148241_01167007
CI01000065_01173590_01277821.mRNA mRNA upstream 132103 1173515 ~ 1277821 (-) False CI01000065_01173590_01277821
CI01000065_01297837_01321136.mRNA mRNA upstream 256387 1297799 ~ 1321136 (-) True CI01000065_01297837_01321136
CI01000065_01373412_01382125.mRNA mRNA upstream 331862 1373274 ~ 1382947 (-) True CI01000065_01373412_01382125
TU303837 other downstream 253503 783538 ~ 783661 (-) True G267748
TU303828 other downstream 412507 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 457137 554468 ~ 556828 (-) True G267718
TU303798 other downstream 472950 554351 ~ 556828 (-) True G267718
TU303067 other downstream 982777 54287 ~ 54387 (-) True G267025
TU305637 other upstream 2267031 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 2267376 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 2267376 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 2732468 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 2751711 3807558 ~ 3810160 (-) False G269656

Expression Profile