RNA id: CI01000065_01076737_01078446.mRNA



Basic Information


Item Value
RNA id CI01000065_01076737_01078446.mRNA
length 2471
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000065_01076737_01078446
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 1076737 ~ 1079588 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGAAATACAGATTCACATGCATCACACTTAATAACAAACCACGTCCACAGTGTGTTGTATGTTCTGAGGTCCTTGCAAATGACAGTTTGAAACCTGTGAAACTAATACGTCAATTACAAACCAAACACCCAACGTTAAAAGATAAACCGGTTGACTTTTTTTGCCGTAAAGAATCAGGATTAATGAATCAAAAACAAACTATGACCAACCAAACCACTGTGGCAGCCAACACACTTACTGCTTCATATGAGGTAGCGTATTTAGTTGCCAAGGCCAAAAAGCCTCATACAATTGCAGAGAGCCTCATTCGTCCAGCAGCAATGGCTATCTGTAGAAATATGTTTGGAAATAAATTTGCCAGTGAAGTTGAACAAATTCCATTATCAGACAACACTATGAGCCGCCGTATCGCTGAGATGGCTACCAACATCAAATCAATGGAAAAAACATGCACAGATAGAGATATTTTTGAAAATCTCAATGGTAAACTGGAAGAACTTGGTCTTTGTTGGGACAATTGTGTTGGTGTGTGCACAGACGGAGCGGGATCCATTTTAGGGAAAAACAAAGGGCTCGCTGCTTTGGGAGATCCTTGCAGCAAAACCCTTCCTGCAGAGTTAAACGCAGTGCTTCAAACAGCAACACAAGTTGTAAATTTCATCAAGACTCGCCCCATAAAATCAAGACTGTTTGCTCCGTTGTGCAAAGAAATGGGGTCAGAATATGAGTCACTACTCCTGCACATGGAGGGCCCGAATTCAAACCTACTAACAATGTCTGATAAAATTTTGGGGTTTGTGAGGAAACTGGAGCAATGGAGAGGGCAGGTTGATGGGGGTAATGTAGACATGTTCCCAACCTTGGATGAATTTCTCACGGAAAATGAGCTTAACTGGGATGTCACAAAAAAAGAAATTTCTCTCCATCTGCAAGCCCTGTCTGCACATTTCAATAAGTATTTTCCAGAGCAGCATAGTTGGAACCAGTACGACTGGGTTCGTAACCCCTTCATCGAAAGCGCAGTGAGTCTGTCATCAAATCAGCAGGATGCCCTTCTGGACCTTTCAAGTGACCGAACTTTGAAGACACTGTTCGACTCATCAAACTGTCAGAATTCTGGCTGTCAGTGGAGACTCGCGAGACTTGCAATTAATGTACTTTTGCCCTTTGCCTCAACTTGGCTCTGCGAAGCAACATTTTCTGCATTAACTTTCATCAAAAGCAAGTATCACTCATGCTTACTGACAGTGGACGATGATTTACGGATAGCTGTGTCGGGTATCCAACCACGGATTGGATCTCAGAAACAGACTCAGCCATCACATTGAATTAGGTGAGCTGGTTTTATACAGTGCTCAGCGTAAATGAGTACACCCCCTTAGAAAAGTAACATTTTAAACTATATCCCAATGAACACAAAATCAATTTCCAAAATGATGACAAGACTAAGTTTAATATAACATCTGTTTAACTTATAATATAAAAGTAAGGTTAATAATATAACTTAGATTACACATTTTTCAGTTTTACTCAAATTAGGGTGATGCAAAAATGAGTACACCCCACAACAAAAACTACTACATCTAGTACTTTGTATGGCCTCCATGATTTTTAATGACAGCACCAAGTCTTCTAGGCATGGAAGGAACAAGTTGGCGACATTTTGCAAGATCTATCTTTTTCCATTCTTCAAGAATGAGCTCTTTTAGAGACTGGATGCTGGATGGAGAGTGATGCTCAACTTGTCTCTTCAGAATTCCCCATAGGTGTTCGATCGGGTTCAGATCAGGAGCCACTGAATCACTTTCACCCTGTTCTTCTTCAGAAATCCAACAGTGGCCTTAGATGTGTGTTTAGGTTCATTGTCATGTTGGAAAAGTGCACGGAGTGATGGTAGCATCTTCTCTTTCAGTATAGAGCAGTACACCTGTGAATTCATGATGACATCAATGAAATGCAGCTCCCCGACACCAGCAGCACTCATGCAGCCCCACATAAGGACAGTGCCACCACCATGTTTCACTGTAGGCACCATGCATTTCTCTTTGTATTCCTCACCTTTGCGACACCATACAGTTTTGAAGCCATCAGTTCCAAAAACATTTATCTTGGTCTCATCACTCCAGAGTATAGAGTCCCAGTAGTCTTCATCTTTGTCAGCATGGGCCCTGGCAAACTCTAGGCGGGCTTTTTTGTGCCTGGGCTTTAGGAAAGGCTTCTTTCGTGGATGGCACCCATGCATGCCATCAGTGGGGTGTACTCATTTTGTATCACCCTAATTAAAGTTATATTATTAACCTTACTTTCATGTTATAAGTTAAACAGGTGTTATATAAAACTTTGTCTTGTCAACATTTTGGAAATTGTTTTGTGTTCATTGAGATATTGTTTAAAATGTTACTTTTCAAAGTGTGTGTACTCATTTATGCTGAGCACTGTATATATTTTATGTAATGTTTGCAATGTTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU303650 lncRNA upstream 4683 1071804 ~ 1072054 (+) True G267574
TU303647 lncRNA upstream 6519 1069831 ~ 1070218 (+) False G267573
TU303648 lncRNA upstream 6646 1069831 ~ 1070091 (+) True G267573
TU303637 lncRNA upstream 33867 1042464 ~ 1042870 (+) True G267565
TU303626 lncRNA upstream 44961 1017850 ~ 1031776 (+) True G267557
TU303631 lncRNA downstream 43715 1123303 ~ 1124325 (+) True G267561
TU304138 lncRNA downstream 287641 1367229 ~ 1416137 (+) True G268021
TU304139 lncRNA downstream 293012 1372600 ~ 1423535 (+) True G268022
TU304132 lncRNA downstream 295762 1375350 ~ 1400757 (+) True G268017
TU304131 lncRNA downstream 325206 1404794 ~ 1412241 (+) True G268016
CI01000065_00873636_00877487.mRNA mRNA upstream 199250 873636 ~ 877487 (+) True CI01000065_00873636_00877487
CI01000065_00800809_00808759.mRNA mRNA upstream 267863 799876 ~ 808874 (+) True CI01000065_00800809_00808759
CI01000065_00750437_00764088.mRNA mRNA upstream 312440 750437 ~ 764297 (+) True CI01000065_00750437_00764088
CI01000065_00633526_00695106.mRNA mRNA upstream 381631 633526 ~ 695106 (+) True CI01000065_00633526_00695106
CI01000065_00625575_00629127.mRNA mRNA upstream 447443 625575 ~ 629294 (+) True CI01000065_00625575_00629127
CI01000065_01452148_01608735.mRNA mRNA downstream 372560 1452148 ~ 1608735 (+) True CI01000065_01452148_01608735
CI01000065_01867964_01868983.mRNA mRNA downstream 788200 1867788 ~ 1869813 (+) True CI01000065_01867964_01868983
CI01000065_01938179_01949512.mRNA mRNA downstream 858497 1938085 ~ 1950751 (+) True CI01000065_01938179_01949512
CI01000065_02222213_02282352.mRNA mRNA downstream 1142441 2222029 ~ 2282432 (+) True CI01000065_02222213_02282352
CI01000065_02442834_02444552.mRNA mRNA downstream 1362071 2441659 ~ 2445951 (+) True CI01000065_02442834_02444552
TU303494 other upstream 293858 782283 ~ 782879 (+) True G267432
TU302970 other upstream 1032071 43038 ~ 44666 (+) True G266932
TU303653 other downstream 2565 1082153 ~ 1082655 (+) True G267577
TU304676 other downstream 1159571 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 1529319 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 2379369 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 2473216 3552804 ~ 3553124 (+) False G269225

Expression Profile