RNA id: TU304063


Basic Information

Item Value
RNA id TU304063
length 281
lncRNA type sense_over
GC content 0.36
exon number 2
gene id CI01000065_01173590_01277821
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 1173515 ~ 1277821 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACACTCTTGCATGCATTTCATTGGGTATTTCTCTTGTTTACCTTTTTATTTATTGTGATTACTGATTTTTCAAGATGATTCATTTCCAGCTGCTGGTGAGTATAGAAAATAGGTTATACGTTTAGAGAAACTAAAACACAGCTGCTTTACATTCTGAGTTAGAGGTGAACAAACCATATATTTGTAAAATCCAGACCTGTGTTCTCTTCAGGCGTCAGGGAGAAAGCGAACAGCTTTCGTGTATCTTCAAACCTTTGGCAATATGATTGTTTTACTGTAA

Function

GO:

id name namespace
GO:0006307 DNA dealkylation involved in DNA repair biological_process

KEGG:

id description
K18663 ASCC3; activating signal cointegrator complex subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304051 lncRNA downstream 101712 1082998 ~ 1083361 (-) True G267946
TU304049 lncRNA downstream 105714 1079082 ~ 1079359 (-) True G267944
TU304030 lncRNA downstream 148721 1036089 ~ 1036352 (-) True G267926
TU303958 lncRNA downstream 199004 825383 ~ 986069 (-) True G267856
TU303965 lncRNA downstream 305067 877790 ~ 880006 (-) True G267863
TU304104 lncRNA upstream 145696 1331070 ~ 1331343 (-) True G267997
TU304209 lncRNA upstream 180602 1365976 ~ 1366304 (-) True G268087
TU304217 lncRNA upstream 266707 1452081 ~ 1463686 (-) True G268095
TU304276 lncRNA upstream 418088 1603462 ~ 1681220 (-) True G268151
TU304373 lncRNA upstream 572240 1757614 ~ 1757990 (-) True G268237
CI01000065_01148241_01167007.mRNA mRNA downstream 18066 1147874 ~ 1167007 (-) True CI01000065_01148241_01167007
CI01000065_01103779_01119916.mRNA mRNA downstream 64316 1103544 ~ 1120757 (-) True CI01000065_01103779_01119916
CI01000065_01037474_01041412.mRNA mRNA downstream 143661 1037164 ~ 1041412 (-) True CI01000065_01037474_01041412
CI01000065_01017206_01031155.mRNA mRNA downstream 153395 1016696 ~ 1031678 (-) True CI01000065_01017206_01031155
CI01000065_00906591_00915144.mRNA mRNA downstream 269929 905392 ~ 915144 (-) True CI01000065_00906591_00915144
CI01000065_01297837_01321136.mRNA mRNA upstream 112425 1297799 ~ 1321136 (-) True CI01000065_01297837_01321136
CI01000065_01373412_01382125.mRNA mRNA upstream 187900 1373274 ~ 1382947 (-) True CI01000065_01373412_01382125
CI01000065_01911879_01931555.mRNA mRNA upstream 726138 1911512 ~ 1931555 (-) True CI01000065_01911879_01931555
CI01000065_01955024_01969974.mRNA mRNA upstream 767404 1952778 ~ 1970223 (-) True CI01000065_01955024_01969974
CI01000065_01982908_01987337.mRNA mRNA upstream 797029 1982403 ~ 1987488 (-) False CI01000065_01982908_01987337
TU303837 other downstream 401412 783538 ~ 783661 (-) True G267748
TU303828 other downstream 560416 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 605046 554468 ~ 556828 (-) True G267718
TU303798 other downstream 620859 554351 ~ 556828 (-) True G267718
TU303067 other downstream 1130686 54287 ~ 54387 (-) True G267025
TU305637 other upstream 2123069 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 2123414 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 2123414 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 2588506 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 2607749 3807558 ~ 3810160 (-) False G269656

Expression Profile