RNA id: CI01000065_01955024_01969974.mRNA



Basic Information


Item Value
RNA id CI01000065_01955024_01969974.mRNA
length 4631
RNA type mRNA
GC content 0.39
exon number 13
gene id CI01000065_01955024_01969974
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 1952778 ~ 1970223 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGAGTCTCGACAAACCAGCACTCTTTAATTACGAATGCTTACCAAAGAGTAGGTATGCTAACAGGCAAAAACAACTTCTCACCGGTGCTCAGAGATGGGTTCTCTGGTGAGTTGAAGACTCAGCATGATGACCCTCTGGAGTGAGGGGAGTACAATGCTCACCTGAGTTATGTGATCCTTAGCACAGACTAGGCTCAGTCCAGAGGGCGATAGACCCGAACAAAAGAACCCCATTAACATTAACAGGGAATGGGTAAACTACACCCATCAGAGAATGCTGGCAACAGCTGCATTAGTGTCAGCCATGCCAAAATCTTGGAGGCCTGCTTGAACTGGAACAGGGCATGGAGGACCCGAAATAGAAGGTACCCAGTAATGGGGAGGGCCAAAGTTCACCAGACTTCTAATCTTCCTTTTATCTTTAAAGATATTCCTCCCATTCCTACAAACCTGAGCTGCGCTTTGACTGTAACAAAGATATACAGACTCCTGTGTCAATGGGATCCTGGTCAGGATCCTGGCCTTCCAACAAACTATACTCTTCATGCATTGAGGGCCAAATCAAGAAAAAAACAATTTGAGATCCCACCTGGAGAGCATTTCTGCTTGATTCCACGGGATTCTTACAATTTATTTTTAGAGTTGGAAGTTTATGTGACAGCAGTGAATGTCTTTGGAAATGCCACCTCTGCTCCTCTGAAACTGATCCCTATGAAAACAGCAAAGCTCAAACCTCCTAAGATTACAAAGGTTGAAGCATATCCGTCTGGCAGCTTACAGTTCAGCTGGAGTCTTGCAGAGTCTCAGAAATGGTTGCAGGTGACCTTCGGTGTAGAGTTGAGATTGAAAACATTGAACAACCAGCTTGACAAAGAGTTGGTTTTCAACTTCAGGGGGCGACAAGAAAACAGAATAAATGTGTCTGGCCTCCTTCATGGGACAAATTACAGCGCCACAATAAGAGTGAAGTACAGTTTATGGAGTGAATGGAGTGATCCAAAAACAGCCACCACACTTATGAGGGCTCCGGCCGGACATCTGGACACATGGCTCAAACTGAATGATCAGGCCGCTCAGCTCTACTGGAAGCCCTCACAAAAATTTCGTGCCAATGGCTGGAACTTGACATACACTGTTGAATCAAAGGAACCTAAAAAGACTTTGTGTGTAACTCAAGAAAGCCACTGCTTTTTCAGTCTCACCAAGTGGATTAAAAAGGTCTACCTGATAGCCACTAATGCAAAGGGGAGCTCGAATCCTAATGAAGTACCAGTGTATCGGAAGAAAGGGCTGGACCCTGTGTCTAATTTCAATGTGCATCCCCAGTCAGAGACGTCTGTGCTCCTGACGTGGGAAAGCCCGGTGTCCTCCAGAGTCAGGGAATACGTGCTGGAGTGGAGATCTCTGTGTGAGATGCCGGCAGCTCCTCTGTCCTTCATTCTGTTGGACAAAAACAGCTCCAGTACCATAGTAACAGGGTTAAAGGCTTTCATGCCATATGAGATCTCCGTTTATCCCAAATATGTTAACGGGGTTGGACGTCCTCTTACCTTAATGGCATACAGCCGTCAGAAAGCACCCTCTGCGGCACCAAAGTTAGAAACTGTGGAAATCCGTTATTCACAGGTGAATCTTCGCTGGGATAAAATTCCCCTTAATGAGACAAATGGGATCATTCAAGGATATACTATTTACTTTTGGAATGATACGGATGATATCCAAGATGGAATTGGAATGGTGCTCTTTGTTATCCCAGCATGCATTGGGTTATCACTTCTCATCATCATTGTTGTGTTTACCTGTTTGGGGAAACATGAACGGGTGAAGATGTTTTTGTGGCCTATAATTCCCGATCCTGCCAACAGCAGTATTAAGAAGTGGACCACCATTGACTCACTGCAGGGCATGCCTCCCTTTAAAGAAGACAAGGACCCTATGTTGGTGTATCTGTCCCACTTCAGTCTTCTTGATCTGCCTGAGAAAGAGCTGTTCAAGAGTGACTACATCAAGGAGAGCCAGTGGTCACATGATATCTACAGCCGTGATGAGAGTCACAACTCTTTCCAGGCCTGTGGCAGTTACAACTCGGAGCATGACAGGGACTCTGTCCCTTACGCCACTGTTGTTTTCGGTGGTCCGTATCAAAGCCATTCGGCACCTCTGCCAGCCTATGTACGCTCTGATTCCACACAGCCCCTGTTAGGGGGGGACGAGCCTGGCAGCCCCCCACCATACGAGAATGTGCCACTAGTGAGGGGTGTTACTAAAGTGAAACACTTCACTGCATTCCCTCGGAATTCCACTGAAAGTGAGGAGAATGAAGAACTTTGGGAAGAATTCCCTATGCTCAGATTGTTAGAGACGAGGCATACTGATCATAACTAAACTGAATTTGAGTATATATACAAACGTCATGCAGGGGCCCCAAAAAGCAACACAGGCTCATTGGAAAAACGTGCCTCTTCCAACATTTTTGCAAAACTCAGAAAATGTACATACAAATACATAGAAATCACTGCAGTGTCCAGTTGAAAAGAACACTAGAGGCAGTAAAACAGCAACAACTTTTATTCTTTTTGACACAAAATGATTACAGGGATAGATTATCGGATAATAAAGATTTATTTTTGTGCTGTTTCTTGCACAAAACTATGTTATGACCTCAAAACACTTTTACCGTAGAGCATGATTTGTAAACTAATACATTTTGACGTTTTCATCTCATAACCAGATCCATACGTGAGGCTTTTCTGATGTAGTAAACTTGCTCAGTAGCTCACCTGATACAGCAGTGCACTTGTGATGGGAAGAGTCATGATAAAAGAGCTCAAAGACTTGTAAAAGCAGCTAAAATGTTTTATGTCATGTTTTTATGTTTATGTCAAATGTTTTTAGTGTAGGTGGTACATTATTTTCAATTGCGTTAGAGCATTAACCTTTTAGCACCACTTACCTGACATTTCAATTCAGAACTGCTGCGATACGTACAACAACCAACACAATAAAACGTTTTCAGATTCACCTTATTTTTTTTTGGGATAAAACTAAACATGCTTTTAGTGCCACTTACTGGACATTTCACTTTGAAAGTGTTGCGAAGAAATATTGTGTAGAAATGTCGCCACAGGTACGTTTTCCCAATGAGCTTGAGTTGCCAAAAAGGCTACGTTCACACCGAGGCTGTATGCGGTATGTGATTTTATATCATATGTCAGAATAACTCAACATTCATCAAAACTGCACAATTAACTTTCCCTGTATACATATGTATACATTACCGTTCAAAAGTTTGGGGTAGGTAAGATTTTTAAATCTTTTTGAAAGAAGTAAAAAAAACTACACTCACCAAAGTTGCATTTATTTGATCAAAAATACAGTAAAAACAGTAATATTGTGAAAAATGTAACTGTTTTCAATTTGAATATATTTTTAAATGTAATTTTTGTAACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCCGATATGCTGATTAGCTGCTCCAGAAAACATTTCTGATTATTATTATTATCAGTGTTTGTGCTGCAATATTTTTGTGGAAACCGATAAATGTGCTAAATGTTTTTACTGTTACTTTTGATCAATTTAAAGCAAAATAATAATAATAATAATAATTTTTAAGAATTTCTTTTAAAAAATCTCACTGACACCAAACTTTTAAACAGTATGGTACAATAATGTATATTAAGGCCACCAGTTGACTAAAATATTTAATCAACTTCGATATGCAATGTTCCACTTTGATTGGTTCATCTATCATTTAAACTGAACTCATTCTAATACATGAAGTATTTGTAGAATATCTGTGACTACTCAGTTAATTATATGAACTGTCTTTAATATTGCCAGGGACTGTATATCGATGAAACAGACCACTTCATCAAATAGGAGAAAGTGGAACCTTCAATATGGCAGCTCTAATTAAGTAATCCACGCCTTCCAAATACAAGAGCTAATCAGCAAAGTCACTGCCTGGTCTATATGTGAAACTTGTCTTGAGAAATCACATGGGCTGCATCCGAAATAATTACTTCACGGCCGCTAAAAATGTATGTTCTATATAGTATAAGTGTTTGTAGTACGAGTGTAATCTGGACATACTACATTTGCCTATCATGTGACCTACCAGCGTCAGTTGCGTCACTTCACTGCCAATGGAGTGTCAATTGAGAGATGCTTGAGTCTTAATTATGTCACTGTGAGGGTAAATAAGACAAAAAAAATAAAATATATATATATATATACTTGTACTTTTTTGGCTGTATATTTGTATTGAATATATATTTGAATTTTGAATTTATGTACTATTAGAAAAGGAGCACAAATATGTCTGATTTGTATTTGTATGTTTTTTTTTTGTTTTGTTTTTTGAAAAAGAGAAAATCTAAGAAAGAAAAGAAAGACAAAAAAGAAAGTGATAAATGCTATGTTCATTTACTTCATAATTAATGTTACCTGATGTTTGACATGTTTTATATACATTCACCTCTTTTCTGTATGGTGCTTTGAGTTCAGTATTTTATATGCATTTCAACATTTTAAAAGAGTACAAATTTTGGTTACATCTGGCAATGTAGCAGATTTTTTTGGAAGGACAAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU304480 lncRNA downstream 83294 1869224 ~ 1869484 (-) True G268333
TU304390 lncRNA downstream 133064 1819455 ~ 1819714 (-) True G268252
TU304373 lncRNA downstream 194788 1757614 ~ 1757990 (-) True G268237
TU304276 lncRNA downstream 271558 1603462 ~ 1681220 (-) True G268151
TU304217 lncRNA downstream 489092 1452081 ~ 1463686 (-) True G268095
TU304503 lncRNA upstream 13071 1983294 ~ 1983733 (-) True CI01000065_01982908_01987337
TU304587 lncRNA upstream 103262 2073485 ~ 2073707 (-) True G268438
TU304610 lncRNA upstream 108820 2079043 ~ 2080030 (-) True G268460
TU304620 lncRNA upstream 118132 2088355 ~ 2088746 (-) True G268470
TU304621 lncRNA upstream 119565 2089788 ~ 2090019 (-) True G268471
CI01000065_01911879_01931555.mRNA mRNA downstream 21223 1911512 ~ 1931555 (-) True CI01000065_01911879_01931555
CI01000065_01373412_01382125.mRNA mRNA downstream 569831 1373274 ~ 1382947 (-) True CI01000065_01373412_01382125
CI01000065_01297837_01321136.mRNA mRNA downstream 631642 1297799 ~ 1321136 (-) True CI01000065_01297837_01321136
CI01000065_01173590_01277821.mRNA mRNA downstream 674957 1173515 ~ 1277821 (-) False CI01000065_01173590_01277821
CI01000065_01148241_01167007.mRNA mRNA downstream 785771 1147874 ~ 1167007 (-) True CI01000065_01148241_01167007
CI01000065_01982908_01987337.mRNA mRNA upstream 12180 1982403 ~ 1987488 (-) False CI01000065_01982908_01987337
CI01000065_02288372_02357728.mRNA mRNA upstream 318149 2288372 ~ 2357728 (-) False CI01000065_02288372_02357728
CI01000065_02358877_02366169.mRNA mRNA upstream 388630 2358853 ~ 2366169 (-) False CI01000065_02358877_02366169
CI01000065_02679973_02700843.mRNA mRNA upstream 709616 2679839 ~ 2701444 (-) True CI01000065_02679973_02700843
CI01000065_02820772_02829132.mRNA mRNA upstream 849489 2819712 ~ 2829132 (-) True CI01000065_02820772_02829132
TU303837 other downstream 1169117 783538 ~ 783661 (-) True G267748
TU303828 other downstream 1328121 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 1372751 554468 ~ 556828 (-) True G267718
TU303798 other downstream 1388564 554351 ~ 556828 (-) True G267718
TU303067 other downstream 1898391 54287 ~ 54387 (-) True G267025
TU305637 other upstream 1338220 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 1338565 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 1338565 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 1803657 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 1822900 3807558 ~ 3810160 (-) False G269656

Expression Profile