RNA id: TU304503


Basic Information

Item Value
RNA id TU304503
length 440
lncRNA type sense_over
GC content 0.47
exon number 1
gene id CI01000065_01982908_01987337
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 1982403 ~ 1987488 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGGAGAAAGCAAATGGATCAGGCATATAAGCTGGCTTCAGAATCAGCGCACATGGCAAGCGGGAGATCCAAGGACAGGTACGACAGAAAGACCCATGGAGTGGAGTTATAGCCTGGCTGTAGAGTTCTGGTTAGGAACATGTGTGAAAGAGGGGGCCCAGGAAAAATTTGATCATATTGGGAGGAACAGGTCTATGTGGTCCAGAAAAAGAGATCAGAGTGTCCAGTCTATGAGGTGCATCCTGAAACTGGACAAGGGCGAGTCAGAGTCCTTCACCGTAACATGCTCCTGCCTTGTGAATTCCTGCCAGTAGAACAAACCACAGCAACTCTGAGAAAGATGGTAAAAGGAATACAAAGCAAATCAAATTCTGAGCAGCAAGCCAGAGAAAGTACCTCTGAGGATGAGAGCGAATGGACAGGATTTTGCAGACCTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304473 lncRNA downstream 21519 1877092 ~ 1961775 (-) True G268327
TU304480 lncRNA downstream 113810 1869224 ~ 1869484 (-) True G268333
TU304390 lncRNA downstream 163580 1819455 ~ 1819714 (-) True G268252
TU304373 lncRNA downstream 225304 1757614 ~ 1757990 (-) True G268237
TU304276 lncRNA downstream 302074 1603462 ~ 1681220 (-) True G268151
TU304587 lncRNA upstream 89752 2073485 ~ 2073707 (-) True G268438
TU304610 lncRNA upstream 95310 2079043 ~ 2080030 (-) True G268460
TU304620 lncRNA upstream 104622 2088355 ~ 2088746 (-) True G268470
TU304621 lncRNA upstream 106055 2089788 ~ 2090019 (-) True G268471
TU304855 lncRNA upstream 243708 2227441 ~ 2227694 (-) True G268680
CI01000065_01955024_01969974.mRNA mRNA downstream 13071 1952778 ~ 1970223 (-) True CI01000065_01955024_01969974
CI01000065_01911879_01931555.mRNA mRNA downstream 51739 1911512 ~ 1931555 (-) True CI01000065_01911879_01931555
CI01000065_01373412_01382125.mRNA mRNA downstream 600347 1373274 ~ 1382947 (-) True CI01000065_01373412_01382125
CI01000065_01297837_01321136.mRNA mRNA downstream 662158 1297799 ~ 1321136 (-) True CI01000065_01297837_01321136
CI01000065_01173590_01277821.mRNA mRNA downstream 705473 1173515 ~ 1277821 (-) False CI01000065_01173590_01277821
CI01000065_02288372_02357728.mRNA mRNA upstream 304639 2288372 ~ 2357728 (-) False CI01000065_02288372_02357728
CI01000065_02358877_02366169.mRNA mRNA upstream 375120 2358853 ~ 2366169 (-) False CI01000065_02358877_02366169
CI01000065_02679973_02700843.mRNA mRNA upstream 696106 2679839 ~ 2701444 (-) True CI01000065_02679973_02700843
CI01000065_02820772_02829132.mRNA mRNA upstream 835979 2819712 ~ 2829132 (-) True CI01000065_02820772_02829132
CI01000065_02940142_02940429.mRNA mRNA upstream 956321 2940054 ~ 2940813 (-) True CI01000065_02940142_02940429
TU303837 other downstream 1199633 783538 ~ 783661 (-) True G267748
TU303828 other downstream 1358637 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 1403267 554468 ~ 556828 (-) True G267718
TU303798 other downstream 1419080 554351 ~ 556828 (-) True G267718
TU303067 other downstream 1928907 54287 ~ 54387 (-) True G267025
TU305637 other upstream 1324710 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 1325055 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 1325055 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 1790147 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 1809390 3807558 ~ 3810160 (-) False G269656

Expression Profile