RNA id: CI01000065_02679973_02700843.mRNA


Basic Information

Item Value
RNA id CI01000065_02679973_02700843.mRNA
length 1863
RNA type mRNA
GC content 0.46
exon number 7
gene id CI01000065_02679973_02700843
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2679839 ~ 2701444 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAAAATTATGTGAAATCACAATCAAATCTCATATGATTGCATATCTCATAGTTTCATGTTAATTCAATGGCACTGTATGCTAATCGACACTAAAATGAGCGAATTCAGTTTGGCTGAGGGATTGCTTTACGTAGGCATGAGTGTTCAAATCGATCCTCTCTCAAGAACCTACAGGGCATGTTTTGCAATATTATCAATGTGGTCCACCTTATCTTGTGACAAAGTTGATGCTTACATCATTATATCTGCTTTGGAATAGTCTTTTGCGTATGTATAACGTGATAACAGCTGCTTGTAAGCACAAGAAAGTGAGGTTAAATGATAGCAATCTGCTGCTAAAACAATGACCCTAACAATCTGAAATGATTATTCATTAATTTTCATTTATCCCTTTGTAACTTCAGGCTCCGCACATGCGCTTTTTAGGGTATCCGCGCAAGTGTTCCCTTCGTTACGCCTACAGCTGAAGTGTAACCTTGTTTGTTTTTTGTGAAGTGGCGATTGGAGAGCTTTGTTTACGGCCCATGTTTGCTCAAGTGTTCTATTTTTAATGTCACACAATCAAATGCTGAAGAGGCTCCTCTTAATCCTCAAGGATTATGGTGTGTATGACTAGCACCCAAGGCCAAAACCGCTCGTCTGATTCAGACAGGAGAAGCGCGCCGTACGGCACATACTCCTTGTGTAATCGTATAAGAGGCATGCAGGGAAGCCTGGAGGATGTGGAGGAGGAAGCAAGCACACTGATTCTGGCGTTCTTTCAAAAACATGATGCTCATGATGGGTTGGCGTTCCAGTCTAGAAAGACTGAACAGATTACGTCAGAATATTTTCTGAAAGCTATAATGAATTCTGCTAGGGAGAGGATGCGATTTGAATTAGAGTGTGAATCTTTGAGGATGACCGAAAATGCGCCACAGTCCAGGGAGCGAAGGCAATCTTTTTGCGGAATGGGAGACAGAAGAGAAGCCAAATCTACGTGGGCAGGTGTTCCTGTTGGCAGGCTTAAGGAAGAGGGAAAGGTAAGATGCAGAGAAGGCTCCGGAGCAGTTCCTGTGTGCGGCGGCAGCCTCACGCTCAAGACCACTCCTGGAATGGTTGGAAAGGGAGCAGGAGGAATTTTGGAAGGAACAAAGGTTGCTGAGTTATGGGCGAGATTAAGCAAATCTGAGGTGTGCGGCAGGTGGGGCTGTATGGATATGGATCTGGCTGGTTTGAGAATTCAGGGATGGGAGATGATCCAGATGCAATCGGATGAGCTTGCGTGCGAGGAGAAATTGATGCAGCTGAGGTGCGTGGGCGCCCAGCCAGAGTCATCTACGAAGAGCAGGTCGAATGGGGATTTAACCTGGGCGCAGCACAGGCGTGCTGAAGGCCTACTGCCAAGGCCTGCCACTGAAAGAGGACGTGGTCTTGAGGGAGATGGTGTAGTCGTGGGACGTGAGTTCGGCGCCCTACAGGCCTTGCTCGCTCGACTGGCTGAACTGGAGGCTGGAGTGGATTTAGTCCATCAAGGAGACGGAGAGAGACTGTGGAGGAGTGATAAATTAAAGACATGCCTAGGGAAAAGGAAGCGCAATAGAAACAGCGAGGAACTGAAGAAGAGTGATGTCAAAAGGAGGAAGAGGATGATGAAGAAAGCAGCCTCCAATGGAGCAGATTTATTTTGTGTACTGCGTGACTGCTATCTGCTGAATGAAGCGCTCAAATCTATGAAGATGCTTTAGCACAGCCAAACATTTGGTCTGTCAGACACTTTAGCAATCGTACAATGTATTGTATCATGAAACACAAAGATTCCTATAGTTCGAAGCTTGTAGATCAAATGATAGCTGAAAAGACCATCTCAAACCAGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305023 lncRNA downstream 3412 2676105 ~ 2676427 (-) True G268836
TU304981 lncRNA downstream 80847 2598591 ~ 2598992 (-) True G268795
TU304976 lncRNA downstream 86920 2592533 ~ 2592919 (-) True G268790
TU304944 lncRNA downstream 133375 2546106 ~ 2546464 (-) True G268759
TU304936 lncRNA downstream 141515 2538108 ~ 2538324 (-) True G268751
TU305049 lncRNA upstream 2568 2704012 ~ 2704359 (-) True G268860
TU305115 lncRNA upstream 89926 2791370 ~ 2791594 (-) True G268923
TU305526 lncRNA upstream 154220 2855664 ~ 2856587 (-) True G269262
TU305513 lncRNA upstream 221701 2923145 ~ 2924417 (-) True G269250
TU305515 lncRNA upstream 223133 2924577 ~ 2929006 (-) True G269252
CI01000065_02358877_02366169.mRNA mRNA downstream 313670 2358853 ~ 2366169 (-) False CI01000065_02358877_02366169
CI01000065_02288372_02357728.mRNA mRNA downstream 322111 2288372 ~ 2357728 (-) False CI01000065_02288372_02357728
CI01000065_01982908_01987337.mRNA mRNA downstream 692351 1982403 ~ 1987488 (-) False CI01000065_01982908_01987337
CI01000065_01955024_01969974.mRNA mRNA downstream 709616 1952778 ~ 1970223 (-) True CI01000065_01955024_01969974
CI01000065_01911879_01931555.mRNA mRNA downstream 748284 1911512 ~ 1931555 (-) True CI01000065_01911879_01931555
CI01000065_02820772_02829132.mRNA mRNA upstream 118268 2819712 ~ 2829132 (-) True CI01000065_02820772_02829132
CI01000065_02940142_02940429.mRNA mRNA upstream 238610 2940054 ~ 2940813 (-) True CI01000065_02940142_02940429
CI01000065_02979795_02989709.mRNA mRNA upstream 276399 2977843 ~ 2989763 (-) False CI01000065_02979795_02989709
CI01000065_02992054_02993108.mRNA mRNA upstream 290371 2991815 ~ 2993167 (-) True CI01000065_02992054_02993108
CI01000065_03015397_03024204.mRNA mRNA upstream 313408 3014852 ~ 3024204 (-) True CI01000065_03015397_03024204
TU303837 other downstream 1896178 783538 ~ 783661 (-) True G267748
TU303828 other downstream 2055182 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 2099812 554468 ~ 556828 (-) True G267718
TU303798 other downstream 2115625 554351 ~ 556828 (-) True G267718
TU303067 other downstream 2625452 54287 ~ 54387 (-) True G267025
TU305637 other upstream 606999 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 607344 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 607344 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 1072436 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 1091679 3807558 ~ 3810160 (-) False G269656

Expression Profile