RNA id: CI01000065_02940142_02940429.mRNA


Basic Information

Item Value
RNA id CI01000065_02940142_02940429.mRNA
length 760
RNA type mRNA
GC content 0.40
exon number 1
gene id CI01000065_02940142_02940429
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2940054 ~ 2940813 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGGGTTGAAGTGGACTCAGAAGTATGCAGGTACAGTGTGATTGACACCATTTTAAAAAAATATATATATATTTCAATTCTTTGTTTATTTGATTGTTCTGATGTTGACTGATAATGTCTGATCTCTCTCAGTGGATGTGACTCTGGATCCTGATACAGCGAATCCATATCTCATCCTGTCTGATAATGGAAAACAAGTCAGTCATGGAGACACTGAGCAAGACGTCCCAGAAAACCCAAAGAGATTTTATGAGGGTCTTTGTGTTCTGACAAAGAAGGGATTCAGTTCAGGGAGATTTTACTATGAGGTGCAGGTGAAGGGAAAGACTAAGTGGGGTTTAGGAGTGGCCAGAGAATCCATTGACAGGAAGGGGAGGATCACAATGAGTCCTGAGGGTGGAATCTGGATTCTGGGTCTGACTGATGACAATGAATATATAGTTTGTGATAATCCATCTGTCTCTTTCCCTCAGAGTGTGAGACCTGAGAAGATGGGTGTGTTTGTAGATTATGAGGAGGGTCTGGTCTCTTTTTATGACGTGGGCTCCAGCTTTCATATCTACTCTTTCACTGGTCAGAATTTCACTGAGAAACTCTATCCATACTTTAACCCAGCCGATAATGATGAAAGTAAAAACTCAAGTCCACTGGTCATCTCACCAGTCAGTTAAAATGAACAGATAAACCTGGAAAGATTATGGACCATGAAATTCCTAAATGAGATGTTCATTTACACAAACGGAAGCTCATTTCTATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305574 lncRNA downstream 887 2938708 ~ 2939167 (-) True G269303
TU305573 lncRNA downstream 1770 2937920 ~ 2938284 (-) True G269302
TU305516 lncRNA downstream 6508 2932150 ~ 2933546 (-) True G269253
TU305515 lncRNA downstream 11048 2924577 ~ 2929006 (-) True G269252
TU305513 lncRNA downstream 15637 2923145 ~ 2924417 (-) True G269250
TU305575 lncRNA upstream 8732 2949545 ~ 2950332 (-) True G269304
TU305587 lncRNA upstream 37189 2978002 ~ 2978592 (-) True CI01000065_02979795_02989709
TU305614 lncRNA upstream 167475 3108288 ~ 3109555 (-) True G269337
TU305636 lncRNA upstream 363544 3304357 ~ 3305539 (-) False G269348
TU305744 lncRNA upstream 410787 3351600 ~ 3352903 (-) True G269424
CI01000065_02820772_02829132.mRNA mRNA downstream 110922 2819712 ~ 2829132 (-) True CI01000065_02820772_02829132
CI01000065_02679973_02700843.mRNA mRNA downstream 238610 2679839 ~ 2701444 (-) True CI01000065_02679973_02700843
CI01000065_02358877_02366169.mRNA mRNA downstream 573885 2358853 ~ 2366169 (-) False CI01000065_02358877_02366169
CI01000065_02288372_02357728.mRNA mRNA downstream 582326 2288372 ~ 2357728 (-) False CI01000065_02288372_02357728
CI01000065_01982908_01987337.mRNA mRNA downstream 952566 1982403 ~ 1987488 (-) False CI01000065_01982908_01987337
CI01000065_02979795_02989709.mRNA mRNA upstream 37030 2977843 ~ 2989763 (-) False CI01000065_02979795_02989709
CI01000065_02992054_02993108.mRNA mRNA upstream 51002 2991815 ~ 2993167 (-) True CI01000065_02992054_02993108
CI01000065_03015397_03024204.mRNA mRNA upstream 74039 3014852 ~ 3024204 (-) True CI01000065_03015397_03024204
CI01000065_03037531_03045960.mRNA mRNA upstream 96548 3037361 ~ 3045960 (-) True CI01000065_03037531_03045960
CI01000065_03060532_03105332.mRNA mRNA upstream 118604 3059417 ~ 3106175 (-) True CI01000065_03060532_03105332
TU303837 other downstream 2156393 783538 ~ 783661 (-) True G267748
TU303828 other downstream 2315397 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 2360027 554468 ~ 556828 (-) True G267718
TU303798 other downstream 2375840 554351 ~ 556828 (-) True G267718
TU303067 other downstream 2885667 54287 ~ 54387 (-) True G267025
TU305637 other upstream 367630 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 367975 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 367975 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 833067 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 852310 3807558 ~ 3810160 (-) False G269656

Expression Profile