RNA id: CI01000065_02976459_02977209.mRNA



Basic Information


Item Value
RNA id CI01000065_02976459_02977209.mRNA
length 1806
RNA type mRNA
GC content 0.44
exon number 2
gene id CI01000065_02976459_02977209
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2975351 ~ 2977220 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATAAAATGAGCAGTAATAAAATGTGTGGCTGAGAATGAGTTTTTAAGTCTTGTGCCTGAAGGGATGGTCGCACTATCGCTTCCATTCATACGCATGTGAACCGGAAACTCAGGCTCATGCGAATTTAGCTGCGTTCTGAAGTTCGAGTTTGGTGAACGCTGACCTTCAAATTCCTAGCGCGTCAACTTTTAAGCTGCAGGCCATTGTAGTATCTTAAGAAATGTTGCATGCCCAAAGTCTAGTTGTGACCGCAGCATTAAATAAGTAACAGTGACATTGTGACATTGATTAATGATGTCTGACATGCATGTTTTGGAGTGCATTAGTTTGCATACCCCTTTCATAATCTGCAAGATGTTTAACATTAACCCTTTGAAGCCTACTGTTTCATATTTGGTACACAAAAGCCCTCTAAATCAATGTTTCTCAACCAGTGGGTCGTTCTATAGGGGGTCGCGAGACTTTCTCTGTGTTCTCTGTGTTACACCGGCACAGCCAGTAAGTGCGCTTCACAAAAGGCTCATTGAAAACTGTGACCTCCAACGAATCGTATTTTCGAATGTTGCATGAATGTAACACTGTTTCTAAACTGTCCTATCACAATTATTCATCGCTGCCTTGAACGGCTCTTATTGGACAAGGTCCTACTCTCTTAACGTAATGTTACACACGCTAGCAGCTGTTTACCCTGTTGCTTGGTAACAACGGCGCAGGAGATTGCAATGCATTGCTATGCCAGACCTACTATACTGTACGCAGCCACGGCCTGTTAGCTTGACAAAATGCATCTGTTTTTTAAAAGAAAAAAAGCAGAAGAATCAGAAACTCCTTCCATTTCAAAGGCAGCAAAATGTAAACAAAGCAAGTACAACCCAGACTCTATATTAAACATGGATTCACTGCGTTGGACGAAAAACCACAGTGTGTTGAGTGTGGTGAGGGCTTAGCAAAGGAGTCCATGAAGCCATCCAAACTTGAACGTCACCTACAGACTAAACATCCAACATGTGTGGGTAAACCTGTGGATTACTTTGCAACCTTTGGATCGAGTGCGAGCAAGCCCCTTGTTTGCTATTCAAATCAACAAATCAACAGATATTTCAAAGATGGCATTGTTGCTTGCATTTGTACGATACAACTGGGAAGGTGCAACACACGAGGATCTACTGATGTGTAATGAGCACCCAACACGGACGACAGCAGATGAGTGTTTCTGTTGCCTCGATGGCTGTTTCGCACAGAATGGGCTAGATTGGAAGAATTGCATAGGGATTTGCACGGATGGCGCGGCCTCAATGACTAGCAAACATAGTGGGGTTGTGAGGAACATTTTGGACAGAGCACCTGAGGCGACATGGGTTCACTGCTTTTTACACTGTGAAAGCCTCACAGCCAAAGAAATAGTTGGGAATGCGTGGATTCGCGATCCTTTTTCGGTAGACCCAAGTGATGTGGATGTTGTACTCCCCATTAATTTGCAAACACAGTTAGTGGACCTTGCATCTGACGGCAGCCTGCAGCTTGCTTTTCGCAAGACAGACCGGAGCTCCTTCTGGATTCAAACCAGACACGAATATCCAGAACTCGCAGATTGTGCAACAAAGTTTCTCTTACCATTTAGCACTACCTATCTTTGTGAGTCGGGATATTCAACAGTGACTGCAATGAAAACAAAAAGCAGGAATAAGCTGACAACAGCTAGTTTGTGTGCGACACTACGAGTGGCCCTTTCCCTAATTCCACCGCGTCTGGATATCATCATTTCAGAGCGGCAGTCTCAAATGTCACATTAACGTGAGTAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU305193 lncRNA upstream 24939 2949202 ~ 2950412 (+) True G268974
TU305183 lncRNA upstream 34744 2939188 ~ 2940607 (+) True G268965
TU305127 lncRNA upstream 173494 2801644 ~ 2801857 (+) True G268930
TU305048 lncRNA upstream 271740 2703400 ~ 2703611 (+) True G268859
TU304982 lncRNA upstream 375359 2599769 ~ 2599992 (+) True G268796
TU305215 lncRNA downstream 20316 2997536 ~ 2999784 (+) True G268996
TU305216 lncRNA downstream 23123 3000343 ~ 3001750 (+) True G268997
TU305166 lncRNA downstream 32714 3009934 ~ 3037886 (+) True G268957
TU305178 lncRNA downstream 35273 3012493 ~ 3015502 (+) True G268960
TU305182 lncRNA downstream 40672 3017892 ~ 3023226 (+) True G268964
CI01000065_02961093_02964309.mRNA mRNA upstream 11042 2961093 ~ 2964309 (+) True CI01000065_02961093_02964309
CI01000065_02924635_02929062.mRNA mRNA upstream 46259 2924635 ~ 2929092 (+) True CI01000065_02924635_02929062
CI01000065_02896930_02919963.mRNA mRNA upstream 55188 2896930 ~ 2920163 (+) True CI01000065_02896930_02919963
CI01000065_02856492_02888060.mRNA mRNA upstream 86896 2856492 ~ 2888455 (+) True CI01000065_02856492_02888060
CI01000065_02806198_02813320.mRNA mRNA upstream 161629 2806198 ~ 2813722 (+) True CI01000065_02806198_02813320
CI01000065_03002626_03002997.mRNA mRNA downstream 25367 3002587 ~ 3003015 (+) True CI01000065_03002626_03002997
CI01000065_03027516_03035037.mRNA mRNA downstream 50296 3027516 ~ 3035094 (+) True CI01000065_03027516_03035037
CI01000065_03237462_03238124.mRNA mRNA downstream 260154 3237374 ~ 3238153 (+) True CI01000065_03237462_03238124
CI01000065_03244494_03285831.mRNA mRNA downstream 267274 3244494 ~ 3285831 (+) True CI01000065_03244494_03285831
CI01000065_03304326_03307505.mRNA mRNA downstream 326505 3303725 ~ 3307557 (+) True CI01000065_03304326_03307505
TU304991 other upstream 337146 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 735353 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 1892696 1082153 ~ 1082655 (+) True G267577
TU303494 other upstream 2192472 782283 ~ 782879 (+) True G267432
TU302970 other upstream 2930685 43038 ~ 44666 (+) True G266932
TU305428 other downstream 481737 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 575584 3552804 ~ 3553124 (+) False G269225

Expression Profile