RNA id: CI01000065_03113629_03136974.mRNA



Basic Information


Item Value
RNA id CI01000065_03113629_03136974.mRNA
length 1234
RNA type mRNA
GC content 0.53
exon number 8
gene id CI01000065_03113629_03136974
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3113458 ~ 3136974 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGAGCCCTTCAGAAAGCTGCTGGTTCAGGGTCTGATAAAGGGGCAGACGTTCAGGGTGGCAGAGACCGGCCAGTACCTGAAGAAAGAGGACGTTGATTTCACAGGTTCGGAGCCCGTTCAGAGGGACACCGGGAGCCGACTGCAGGTCACATGGGAGAAGATGAGTAAATCCAAACACAACGGGCTGGACCCTCAGGAGGTGGTGCAGCAGTACGGCATCGACACCATGCGCCTCTACCTTCTGTACGCCGCTCCACCTGAGCAGGACATCTTATGGGACGTCAAGACTGATGCCATCCCAGGAGTGTTGAGATGGCAGGCCCGTCTGTGGGGTTTGGTCACCAAACTGAGAACGACCCGTGAGGGTCAAGAGACGCCCAACCCATCCGTCCTGAACAAGAGAGAGCGCTCCGAGGCCAAGAAGATCTGGGAGAACAAGAACTACGCCATCACACAGGGCCTCTCGAGGATAGTTGTTGTTCTGATGTGGAGCCGGCCTGATCTGGACCGTCCAAAGGAAATTGGCGATCTAGTCTCAAACCACGACAGAAGAGCAGCTTCCACTAGCAGAGGTCACTTCACAGAGGACTTCCTGTTTAATGCGGCCATCTCTCGGCTCATGGGGCTGACCAACACACTCTCACAAGCCTCAGCTCGAGTAGTTCTGCACAGCGTGGAGTTCGAGGAGGCTCTGGCGTCGCTCTGTCTGATGGCTGCACCCATGTGTCCACACTTAGCTTCTGAACTATGGGCAGGTTTGTCTCAGGTGAGGAATCCTCTAGGAAGTGTGCTGTCTGGGAAGGGAAGTGTCCTTCAGCAGCCGTGGCCTAGTGTGGACCCAGAGTACCTACAAACCCCCGACACACTCCAGCTGTCCGTACGGATCAATAATAAGGCGTGTGGGAATATATCTGTACCTCGTGAAGTGGCTCAGGACGCACAGAAGGTTCAGGAACTGGTACTGAACAGTCCTCTGGGCGCCCGTCTGCTCTCTAACCGCGTCATAAAGAAAGTCTTCCTCTCACCCAGAACTGCCCTCATCAACTTCCTGGTGGAAGAATGACATGGCGAGATGTGCCTTACTGGAGTTTTGGATCCAGAATGGACCATACATGAAAAGACTCTGATATCCAAAGAGCCACGTCAGGAGAACAGGACATGATGTACTGAGTAACAAGATGTTGTGGAGTGTTTCTCAGATGAAAATGAAAATTGCTCTTTGCTACTAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU305614 lncRNA downstream 3903 3108288 ~ 3109555 (-) True G269337
TU305587 lncRNA downstream 134866 2978002 ~ 2978592 (-) True CI01000065_02979795_02989709
TU305575 lncRNA downstream 163126 2949545 ~ 2950332 (-) True G269304
TU305574 lncRNA downstream 174291 2938708 ~ 2939167 (-) True G269303
TU305573 lncRNA downstream 175174 2937920 ~ 2938284 (-) True G269302
TU305636 lncRNA upstream 167383 3304357 ~ 3305539 (-) False G269348
TU305744 lncRNA upstream 214626 3351600 ~ 3352903 (-) True G269424
TU305760 lncRNA upstream 260136 3397110 ~ 3397359 (-) True G269436
TU305764 lncRNA upstream 300164 3437138 ~ 3437390 (-) True G269440
TU305713 lncRNA upstream 353598 3490572 ~ 3491380 (-) True G269399
CI01000065_03060532_03105332.mRNA mRNA downstream 7283 3059417 ~ 3106175 (-) True CI01000065_03060532_03105332
CI01000065_03037531_03045960.mRNA mRNA downstream 67498 3037361 ~ 3045960 (-) True CI01000065_03037531_03045960
CI01000065_03015397_03024204.mRNA mRNA downstream 89254 3014852 ~ 3024204 (-) True CI01000065_03015397_03024204
CI01000065_02992054_02993108.mRNA mRNA downstream 120291 2991815 ~ 2993167 (-) True CI01000065_02992054_02993108
CI01000065_02979795_02989709.mRNA mRNA downstream 123695 2977843 ~ 2989763 (-) False CI01000065_02979795_02989709
CI01000065_03159239_03164326.mRNA mRNA upstream 22265 3159239 ~ 3164326 (-) True CI01000065_03159239_03164326
CI01000065_03369379_03371121.mRNA mRNA upstream 231945 3368919 ~ 3371441 (-) True CI01000065_03369379_03371121
CI01000065_03373810_03377138.mRNA mRNA upstream 235729 3372703 ~ 3377138 (-) True CI01000065_03373810_03377138
CI01000065_03385522_03396519.mRNA mRNA upstream 248548 3385522 ~ 3397081 (-) True CI01000065_03385522_03396519
CI01000065_03413002_03434286.mRNA mRNA upstream 275755 3412729 ~ 3434286 (-) True CI01000065_03413002_03434286
TU303837 other downstream 2329797 783538 ~ 783661 (-) True G267748
TU303828 other downstream 2488801 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 2533431 554468 ~ 556828 (-) True G267718
TU303798 other downstream 2549244 554351 ~ 556828 (-) True G267718
TU303067 other downstream 3059071 54287 ~ 54387 (-) True G267025
TU305637 other upstream 171469 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 171814 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 171814 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 636906 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 656149 3807558 ~ 3810160 (-) False G269656

Expression Profile