RNA id: CI01000065_03304326_03307505.mRNA



Basic Information


Item Value
RNA id CI01000065_03304326_03307505.mRNA
length 3461
RNA type mRNA
GC content 0.46
exon number 4
gene id CI01000065_03304326_03307505
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3303725 ~ 3307557 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATATAAACTTTTACGCGCTGGACTCTACAGACTTTCTCACACACACACACACACACACACACACACATATATACATACATTTACATACATTTTTCACCTTGGATGTTTAACGTGGTTTTTGTGTGTACACGGATTGAACTGTAAATACACTTGGGTTTATTGATGACATTTGTCTCCTGTTTTATTTTTTTTGTTTTGTGTTGTTTAAGTGGCACAATCGTTCCCCTTATTTAGTGTATCCTCCTGGCATACTAACTGGAGTGTTACATATTGGTGGCCCGTACGGGGACGTTCTTTTTTGTGTGTAATTTTGTTTTACATATTTTTAAAATATGGAGAACACAGATGTAAATACCCAAGAACAAGATGCAATTGTGAATACTGACAACAATGATAATGTAACTGAAGCTAGGAGTAGTTCTGAAACACCCAATGCAGATTTCACTGCAGGCCCGTTTGTTACCAGACGCAATCCAACTGCTGAAATAACATCTATGCCAAGCTCACTGTATATTTCAGATGATGATGGAGAAACTGATGGCGATGATGATGATGCTAATGATGAAAGCTGTGTAATGAATGTGAATATGGTACAAACAATGCAAACAGACATAGCTCAAGTCAAGGTGGATTTACTGGCCCTTAATACTAAGGTACAAACATTTGAGCATGAGTTTAAACAGTCTGTAGAAAGCACCCTCAATCAGGAGTCCAGTTTCAGGGATGCTGTGGACGCTAGCTTAGCAGACTTAGAGGACTCTTTTCGTAACTGCTTGGAGAAGTTGGAGAGGGCTGTGGTGGACTGTTTGCTGAGGAGAGATGAAAAGTGGGAACGTCAAATGAAGAAGCTACGACTAACTAGTACCCCTTCTCTCTCCAGATTACACTCTTATACTCCAGCTCACTCTATTTCCTCGGTTCACGCTCCCGTAACCCCAGTGCCAGCCCCTAGAGTTAGAGTACCACTACCAAAATCTGCCAATGCAACATATGTCTCCCCTGTGTCTACACCACTAACCAATGTGCTTAATCCTCCAGCTGTTCCAAGTACATTTTCTTTCTGCACTCAGCACCCTATTCGGTTGGAGTTTCCCACCTTTGGTGACTCCTGCGAGACATCGGATGTGCTCAACTTCATCAAAAAATGTGAGAACTACTTGGACATCAGGCCCCTTCCCAGTGGGGAGCTCTACGGAACCCTGAACATGGCCCTCTGCCTCAAATGGAAGCCTGATATGGCGGAGGACGAGATGGTGAGCCGCATCCTCATCAACATTAACCCCAGGGTCGCGGGCTGTTTGAGGGGGACTGTGAAAACAGTGGAACAGCTGGTGAAAGTTGGATCTATGGTGGAAAAAAAAACTGTATGGGGGCAAAAGATTATTGGCAGAAATACCTCCAAAAACCTGGCTGGATTATCGATCGCACAACCTCACTCACTGACATCACTCCTCTTGGTTCCTGTAACAGTAAAAGGCAAAGAAGTTAAGGCCGTATTGGACACAGGTAGCACCTACACCCTCATGCAGGAAAACCTGTGGAGACAGTTGGGTAGCGCTGCTTCATCACTCCTTCCAAACTCCCAACAAAGATTCATCATGGCTGATGGGAAGGTTCACCTGGCAATAAACCAAAGCTCAATTAGTTACAAGTGGCATGATAAAGTCTGCAGTGTGGACACTTATATAATGAAGGGAGCCCACCTCGCATTTCCCCTGATTGCTGGCTTGGACTTCCTGAGAGCCGCTGAAGCCCTTCTGGATGTGGGCGAAGGAAGATATGGCCTAAAAACAGAGAAAGGCTATACATACTACCCTTTCTTGACATCTTCCATTACTCCGGGGCTGACAACGACTGGCGAAAACACTCTCCACCCTGTTGCTGTGACTCTCTACTGCGCCTTACCTCCAACCTGGCAACCACCACTCACTACCCTGAACACGGAGGTTGTTCCATGCTGGGACTCTGACAATCAGGAGGAGTTGCGGAAGCTGATGGCTACCTGGCCATGCACCACCTCAGATGTCTTGGGGAAGACATCGGTAGAACAACATAAAATCATCTTGTCTGATGAGGTACCGATTAAGTCCAGAGCATATAGAGTCTCACCCTTCAAAAGGAAGATCATTGAAGACCAAGTAGATCAGATGCTCCGAGACCACATCATTGAACCCTCCTTTTCTCCATGGTCATCACCGGTGGTGCTAGTCCCCAAACCTGATGGCCATGCAGCTCTAGCTTGGGCCTTCAATAGTCCCAAAACCTCCTCTCGTCTGACCCGCTGGACTCTTAGGCTGCAACAATTCCACTTTCAGGTGCATCACAGAAAGGGGTGCCTCAATCTAGGTCCAGATGCATTATCTCGTGCCTGTGAGCCAGACCATGTGCACTGCTTACCCATAACATCTAGGCATGCATCAGACATTCCTAATACACTAGATGAAATATCTCAAGCCCAGAAGAATGACACTACCATATCTCACCTGCAATCAGATCAAAAAAAAATCAGGAAAGTTCAAGGCCAGCACATTACCTTCGAGGACCACCAGTGGGTATTGTATCGCCGAGTACCTGTCAGAAATAATGGAGACAAGTTTCAAGTGGTCGTACCTCAGGCATTAATACCCACTTTCCTCCATTACTTTCATGATAACCCTCTGGGGGGACATCTTGGCCTGTTAAAAACTCTGTTGAGGCTTTTGGAGGTGGCATCGTGGCCAAGTATCCGCAAAGACGTCTGGCAATACGTCAAGGGCTGCGACACCTGTCAAAAATACAAGCATGACGAAAAAAACCTAGTGGGTTTCTACAAAACACGCAGAGATGGCAAGACACAGAAAATTGTCAGAATTCTCAAGGATGAGATCTTTACCCGCTGGGGGGTACCAAAATACATTATATCTGACCGTGGAGCACAATTTACCTCCAATGTTCTGGCCGAGCTCTGCAAGACCTGGGGCACTACCCAAAAACTCGCTACCAGTTATCATCCACAAACAAACCTGACCGAAAGAATAAACCGGACATTAAAAACTATGATTGCGTCATATGTGGGACAAAACCATCAAACATGGGACCAGTGGTTATCTGAATTTCGTTTTGCCATTAATACAGCTTACCAGGAGACCACTGGCAAAACTCCAGCAGAGTTGATGCTGGGCAGGCAGCTTCACGGGCCTTTGGAGAGATCAATCTTCAGACCACTTGCACCAGATCAAGCCTCATATCATCTCCTGGAGAGACAGAACATCATGGCAGAGGAGGTAAAGTCTAGAACGAAAGTGCAGCAAGCCAGACAAGCTAGATACTACAATACCCGAAGGAAAGAATGCGCAGTTTCACTTGGGAGATCTAGTCTGGATGAGAACACATCCACTTTCATCAGCCTCGAACAAATATTTTGCTAAGCTAGCGCCCAAGTGGAAGGGACCAGCTGAAATAATCAAAAAAATAGGGCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU305259 lncRNA upstream 190811 3111847 ~ 3112914 (+) True G269033
TU305253 lncRNA upstream 194787 3108590 ~ 3108938 (+) True G269029
TU305229 lncRNA upstream 222044 3025208 ~ 3081681 (+) True G269005
TU305182 lncRNA upstream 280499 3017892 ~ 3023226 (+) True G268964
TU305178 lncRNA upstream 288223 3012493 ~ 3015502 (+) True G268960
TU305413 lncRNA downstream 130415 3437972 ~ 3438539 (+) True G269167
TU305427 lncRNA downstream 151400 3458957 ~ 3461819 (+) False G269181
TU305452 lncRNA downstream 208737 3516294 ~ 3516541 (+) True G269205
TU305465 lncRNA downstream 234546 3542103 ~ 3542572 (+) True G269218
TU305474 lncRNA downstream 244213 3551770 ~ 3551991 (+) True G269223
CI01000065_03244494_03285831.mRNA mRNA upstream 17894 3244494 ~ 3285831 (+) True CI01000065_03244494_03285831
CI01000065_03237462_03238124.mRNA mRNA upstream 65572 3237374 ~ 3238153 (+) True CI01000065_03237462_03238124
CI01000065_03027516_03035037.mRNA mRNA upstream 268631 3027516 ~ 3035094 (+) True CI01000065_03027516_03035037
CI01000065_03002626_03002997.mRNA mRNA upstream 300710 3002587 ~ 3003015 (+) True CI01000065_03002626_03002997
CI01000065_02976459_02977209.mRNA mRNA upstream 326505 2975351 ~ 2977220 (+) True CI01000065_02976459_02977209
CI01000065_03344678_03368295.mRNA mRNA downstream 36774 3344331 ~ 3368472 (+) True CI01000065_03344678_03368295
CI01000065_03398558_03399971.mRNA mRNA downstream 91001 3398558 ~ 3400425 (+) True CI01000065_03398558_03399971
CI01000065_03486630_03494354.mRNA mRNA downstream 179010 3486567 ~ 3495740 (+) True CI01000065_03486630_03494354
CI01000065_03692428_03692874.mRNA mRNA downstream 384871 3692428 ~ 3693420 (+) True CI01000065_03692428_03692874
CI01000065_03709249_03716992.mRNA mRNA downstream 401587 3709144 ~ 3717908 (+) True CI01000065_03709249_03716992
TU304991 other upstream 665520 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 1063727 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 2221070 1082153 ~ 1082655 (+) True G267577
TU303494 other upstream 2520846 782283 ~ 782879 (+) True G267432
TU302970 other upstream 3259059 43038 ~ 44666 (+) True G266932
TU305428 other downstream 151400 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 245247 3552804 ~ 3553124 (+) False G269225

Expression Profile