RNA id: CI01000065_03373810_03377138.mRNA


Basic Information

Item Value
RNA id CI01000065_03373810_03377138.mRNA
length 1863
RNA type mRNA
GC content 0.38
exon number 4
gene id CI01000065_03373810_03377138
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3372703 ~ 3377138 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGACGCCACAAATCCTCTACATCCCATTTCAACTGGATAAACTTTGGTGTTCCAGCCACGCTGCTTCGCTTCTGCTGCAAGCTCTGCATAGCGCAGCTTCTTTCGCTCATAGGCCTCCTGAACTAAGTTCTCCAATGGGACTGCTTCTAGCTACATGTACAGTGAGCAATATGGATTTTAAAGCCATCAAGCTTCTTATTTGTGTCGTTTGTCTGGTGCAGTCCAGCCCGGAGCAGAGCTCTACAAAGAGAAAAAAAGAGTCGAACAGTGCTGCTATTGAGGAGCTGAAGAAACAGATCGATCAGATTGTGCAAGATCTGAATCTGTTGAAGGAACAACAAGCTTTACAAACAGTTTGCCTGAAAGGCATCAAGATCCCAGGCAAATGTTTTCTTGCAGACACGATGAAGAAGACCTTTCACGTGGCAAACGATGACTGCATTGCAAAAGGTGGAACACTCAGCAGCCCTCTTTCTGGCGATGAGAACGACCAGCTGTACGAGTACGTCCGGCAGACCATCGGGCCAGAAGGGCACATCTGGTTGGGTGTAAATGACATACTGAAGGAGGGCGAGTGGACTGACCAGACAGGCTCACCAATACGCTTTAAGAACTGGGAATCAGAGATCACCCATCAGCCTGACGGAGGCCGCAGTCAGAACTGTGCCATCCTGTCCAGCACAGCCAACGGGAAGTGGTTTGACGAGGACTGCCGTGGTGAAAAGGCGTCTGTCTGCCAGTTCAACATCGTCTAAACTCTTATTAGAGCTACATGCTATAGAATGATGCATGGTGAACATACAGTATATACAATACACAACCAAAAGTATGTGGACACTGAAATGTCCTAAACTCTTAAAAGTAAAGGTTCCAAAAAAGGAGTTTTTGCTGTGATGCCATACACTCTTAAAAATAATGGCTCCAAGAGGAGTTTTCCACAGCTGTTCCATAGAAGAACCATTTTGGGTTACCCAAAGAACCTTTCAGTGAACAGTTCCTAAAAGAAACTTCTCAAAAGAATTTTTGTCTTTGTAAGAAAAACATTTTAATAATCTAAAGAATCTTTTCCACTATAAAGAACCTTTTGAGGAATGGTAAGATTCCATGGATGTTAAAGTCTCTTCATCGAACCATCAATGCCAATAAAGAACCTTTATTTTCAAGAGTGCAGAACAATTTTAGGTCCCACCAAGAACCTTTCAGTAAACATTTCTTAAAAGAACCTTTTTTTTTTTTTTTACTTAGTGTGAAGAATATTTTAATAAAGAACCTTTTTCCACCATAAGGAAGGTTTTCACAATGGAAATGTTCCACAGATGTTAAAGGTTCTTCATGGAACCATCAATGCCAATAAAGAACATTTATTTTTATGTGTAAACAGTAAAATGAGAACCCTATTGGATCTTTATTATAACCATCACATTTACAAGTATGTTCACAAATTAGTTTATATTGACAAAATACTAAGTACTGAATTTTAATCTTTAATCTAAATGATTCATATTATGCAAACTAGCAGGAACTGTGCATTTAAGTAAAAAGTGGGAAAAACTCATGGCGATTTGTAACTATTTTACATTTTGGCAAATTAATTTGAATTTGTACAATCTCATTTGCATGGTTTCACAAGATCTAACGCCCCACTGAGTGGTAGACCTTCTTGCTTCATTTAAAAAAATTTTTTTATAAGAATTTATACAAAATCACCAACTTGTAAAATAGTATTTTCTCACGAGATTGGATTGGAAAGTACACATTTTTCCTCTTTCAATTCTTGTTTTGAAAATGTGGAATTCCTGCAAATGTTTCTGTCTCATAATGGCTTTCTTAACTTTTATTGACAATAACAGAAACACAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305744 lncRNA downstream 19800 3351600 ~ 3352903 (-) True G269424
TU305636 lncRNA downstream 67164 3304357 ~ 3305539 (-) False G269348
TU305614 lncRNA downstream 263148 3108288 ~ 3109555 (-) True G269337
TU305587 lncRNA downstream 394111 2978002 ~ 2978592 (-) True CI01000065_02979795_02989709
TU305575 lncRNA downstream 422371 2949545 ~ 2950332 (-) True G269304
TU305760 lncRNA upstream 19972 3397110 ~ 3397359 (-) True G269436
TU305764 lncRNA upstream 60000 3437138 ~ 3437390 (-) True G269440
TU305713 lncRNA upstream 113434 3490572 ~ 3491380 (-) True G269399
TU305770 lncRNA upstream 118950 3496088 ~ 3496312 (-) True G269446
TU305772 lncRNA upstream 140598 3517736 ~ 3518149 (-) True G269448
CI01000065_03369379_03371121.mRNA mRNA downstream 1262 3368919 ~ 3371441 (-) True CI01000065_03369379_03371121
CI01000065_03159239_03164326.mRNA mRNA downstream 208377 3159239 ~ 3164326 (-) True CI01000065_03159239_03164326
CI01000065_03113629_03136974.mRNA mRNA downstream 235729 3113458 ~ 3136974 (-) True CI01000065_03113629_03136974
CI01000065_03060532_03105332.mRNA mRNA downstream 266528 3059417 ~ 3106175 (-) True CI01000065_03060532_03105332
CI01000065_03037531_03045960.mRNA mRNA downstream 326743 3037361 ~ 3045960 (-) True CI01000065_03037531_03045960
CI01000065_03385522_03396519.mRNA mRNA upstream 8384 3385522 ~ 3397081 (-) True CI01000065_03385522_03396519
CI01000065_03413002_03434286.mRNA mRNA upstream 35591 3412729 ~ 3434286 (-) True CI01000065_03413002_03434286
CI01000065_03442791_03477709.mRNA mRNA upstream 65457 3442595 ~ 3477709 (-) True CI01000065_03442791_03477709
CI01000065_03544613_03551034.mRNA mRNA upstream 167393 3544531 ~ 3551034 (-) True CI01000065_03544613_03551034
CI01000065_03589916_03598053.mRNA mRNA upstream 212633 3589771 ~ 3598146 (-) True CI01000065_03589916_03598053
TU305632 other downstream 60223 3308788 ~ 3312480 (-) True G269348
TU305637 other downstream 60299 3308443 ~ 3312404 (-) False G269348
TU305628 other downstream 60299 3308788 ~ 3312404 (-) False G269348
TU303837 other downstream 2589042 783538 ~ 783661 (-) True G267748
TU303828 other downstream 2748046 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU306020 other upstream 396742 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 415985 3807558 ~ 3810160 (-) False G269656
TU305996 other upstream 416108 3807558 ~ 3810243 (-) True G269656

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019318 False 594 mRNA 0.49 3 NC_007127.7 2840775 ~ 2844058 (+)