RNA id: CI01000065_03944604_03949933.mRNA


Basic Information

Item Value
RNA id CI01000065_03944604_03949933.mRNA
length 2728
RNA type mRNA
GC content 0.47
exon number 9
gene id CI01000065_03944604_03949933
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3944581 ~ 3950187 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATCGTTCAGTCTGCTTATGTGATTTCTCTCAACCTGCATTCATCCTGCATTCAGACTGCCATGCCCGACCAACAAACCTCTCACTCAGCTCCATCAACACACCTCTGGGCTGTTTAGTTTCCAGCCCACCTCTGTGATCTTCACTAGTTATGAGAGATGGACTGTGCTATCTAATTTCTGGCAATAAATAAATGATTCATATTTAGTCTGTGTTCTGTTTTTGGGCCCAAAACTGTGTTTGGTTACAACAGAATGATCTGGCCACAAATTATGGACCCAGCAGACACCGATTCAGTTCACATTGAGCCCTCTCGGGTCAATGTGCACTCCTGGGACAGCATGAACTTCAGCTTCAGAATCTCATGGAAAGCAACCAAGCTATGGCAGTCCCACCAGCACCACATAAACTGGAGTGTGGTATCACCAGTCACAGCTGAGGAGATCAAAGTGGCTCTGCGCACTATGGGCAAAACATCGGCTGGGATGGACAAAAGTCTCCCAGCATCCCTGTCATGTGCCAGAGTGGCGTTCCTACCCAAAGCTGAATGCCCAGAAGATCCAAGCAACTTTCGACCAATAGCCATTTCATCAGTTTTAGCCTGTGCCCTCCACAAAGTTTTCTCCAGGAGGATGAGAGAAGGATTCCAGTCCTCTCCACTTCAATACGCTTTCCTACAGAGAGACAGCTGCCTGGAGGCCTCCTCCCTACTTCATGCTTTGTTGCGATGCACACATGATGAAACTCGACCGTTGGCAGTTGCGTTCTTGGACCTGACCAAGGCTTTTGATGCAATATCCCACCAAGCTATTCTGGCAGCGGCAGAGAAAGCTGGAACACCGCCTCCCTTGCTTAAGTACCTGGAACATCAATGCATCAATGCTATTGCAGAATTACATCTTGGTGCCTTAGCTACGAAGTGCAGCAAGGGAGATACGCCTTTGGGCTTGCTGCACGCACCAATTAAATCAGGTGGCCTGGGGATCCCAAACCTGGGAGCGTCTATACCCCTTCTCCAGAAAAAGAGATTTGGCAAGCTCCTAACTAGCCAAAAAGTTCGTTTAAGACCATTCTACGGAGAGTCAACTTACCATAGAGTAATTACAAATCCAATCTTCTTTCTATTCACCCCGGTCCGAGTGAAGACTACACAAATACAGAAACGAGGTGCAAAAACACAATCAACTATCCCAGTGGCATTCTCATCAGTGTCAAAATATAAAGCAGATTTGCCAGAACAAATCTCTAAAGAAAAGATGATTGCCAATTGGATTGGACGCTCTGGTCTACCTGCTCGTACAGTTGAGGATGATGATTTTATCCTTATGATAGAGAGCATCGATAAGAAGTTGGCAGTGCCGAAGAAAACAAAAATAAACAACTTAGTTGACCAACTTTACAATGACGAAAAAAAATTCAGAGAACAACGTGCCACAGCTCGCAAAATAAACTTGGCTTTGGACATATGGACCAAAAAAGGACTTACAGCATCATTTCTCACCATTAGTGCATGCTACTTTTGTACTCAGGAGGAAAAAGCAAAGCCTATATTGCTGAACCTGGTTCAGCTGTCCCACCCCCAAACAGCAGACTGTATAAAAACTTGTGTTGACAGGATGACCACAGTAGCAGCACAGATGAAGAATCCCAGGAGGACAGTGAAGAAAACTCAGAGGATGTCGAAGACCAAAAGTAGGTTTGGAGCACTAGAGAGGATGCCCTTTGTTGTACATACCTTGCAACTAGTGGTAAACCTACTTCAGAAAGAAACAAGTGTCAAACGCCTCCTAGACAGAGTTCGACTACTTGTTATGCTCTTCCGCAAGTCATCCGTGGCAACAGAGCAACTGCTGCAGCTGTCTGGACTCTCTCTGGTCAAAGACTTCCCCACTACATGGTCCAGCACCTACCAGATGATAACACGTCGTATTGATGCGAAGGACTCACTTACTCAAGTAGCTGATAGGATGGGCTGGGATTGTCTGCTGCCAAGTGAATGGACTACACTAACTACACTCAGAGATCTGCTCCTCCCCTTTGCTGAGCACACCCAGATGCTCCAGATTGACACAATGTCCTTATGTCTGGTGGTGCCTGCACTCCTGGACCTGAGTGCTCACCTGTCTGAGTTTCCCCAGACCCAAGCTGATGCATTCATTGAAAATGATGACAAACACATTCAGGAGCTACTGAATAGTGCAGAACAGTACATTGCTCAAATGGTGTCCCCTGTAATACAGGAGGAAGCTGCTGAAAATGAGGGAGAAGATGAGATATGTGAGGAACAGGAGGAGCCACATGAAAAGCGACCTAGATTTAGATTTCTAACGAAAGCAAGTGCAAAGTCAAACCGGCCATCTAGACCTAGCCACTGCCACAGAAAGCTCTGTGTCAGGCAGGAAATTCAAAAATTCAAGGAGCAGCTGTCACAGCCCATAAACAAAGGGACTGCCTTTGATTTTTGGGCTGCACGTGGCTCTACCTATCAGCTTCTAAAACCCCTGGCCCAAGACCTTCTCGCTGTGCCTGCATCTCCGGCATTTGCTGAGAGAGTTTTTAGTATCGCAGATGACCTGAGTCAGGGCTGTCGGAATCGAGCCAGGATCACAATCCTGGATATATCTGTTGTTGCAGATCCGCTGATGGAACTAACCCACAGGCTGAAAGTGGAGAAATATGGCTCCTGGAGAATGCTGCAGCGATAAGCTCCTGGATTGACACAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306139 lncRNA downstream 6664 3937688 ~ 3937917 (-) True G269785
TU306134 lncRNA downstream 10399 3933983 ~ 3934182 (-) True G269780
TU306130 lncRNA downstream 15874 3928484 ~ 3928707 (-) True G269776
TU306125 lncRNA downstream 18956 3925300 ~ 3925625 (-) True G269771
TU306109 lncRNA downstream 30062 3914087 ~ 3914519 (-) True G269755
TU306578 lncRNA upstream 57744 4007931 ~ 4008235 (-) True G270154
TU306581 lncRNA upstream 61731 4011918 ~ 4012132 (-) True G270157
TU306547 lncRNA upstream 96160 4046347 ~ 4051738 (-) True G270125
TU306620 lncRNA upstream 186637 4136824 ~ 4137054 (-) True G270195
TU306622 lncRNA upstream 188646 4138833 ~ 4204783 (-) True G270197
CI01000065_03935077_03938904.mRNA mRNA downstream 5677 3935018 ~ 3938904 (-) True CI01000065_03935077_03938904
CI01000065_03845250_03848939.mRNA mRNA downstream 95640 3843527 ~ 3848941 (-) True CI01000065_03845250_03848939
CI01000065_03794501_03806693.mRNA mRNA downstream 137888 3793860 ~ 3806693 (-) False CI01000065_03794501_03806693
CI01000065_03701147_03703052.mRNA mRNA downstream 241529 3701131 ~ 3703052 (-) True CI01000065_03701147_03703052
CI01000065_03694059_03694764.mRNA mRNA downstream 249817 3693807 ~ 3694764 (-) True CI01000065_03694059_03694764
CI01000065_04027497_04039742.mRNA mRNA upstream 76323 4026510 ~ 4039742 (-) True CI01000065_04027497_04039742
CI01000065_04070422_04072088.mRNA mRNA upstream 120017 4070204 ~ 4072088 (-) True CI01000065_04070422_04072088
CI01000065_04178828_04180116.mRNA mRNA upstream 227771 4177958 ~ 4180116 (-) True CI01000065_04178828_04180116
CI01000065_04318691_04330504.mRNA mRNA upstream 368248 4318435 ~ 4330782 (-) True CI01000065_04318691_04330504
CI01000065_04470763_04478735.mRNA mRNA upstream 519812 4469999 ~ 4479108 (-) True CI01000065_04470763_04478735
TU305996 other downstream 134338 3807558 ~ 3810243 (-) True G269656
TU305995 other downstream 134421 3807558 ~ 3810160 (-) False G269656
TU306020 other downstream 170287 3773880 ~ 3774294 (-) True G269679
TU305632 other downstream 632101 3308788 ~ 3312480 (-) True G269348
TU305628 other downstream 632177 3308788 ~ 3312404 (-) False G269348

Expression Profile