RNA id: CI01000065_04008274_04010105.mRNA



Basic Information


Item Value
RNA id CI01000065_04008274_04010105.mRNA
length 1210
RNA type mRNA
GC content 0.39
exon number 2
gene id CI01000065_04008274_04010105
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 4008274 ~ 4010194 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTAAGGCCTCTAGGAATAAACAGTTTGAGGAACTGGAAAACAAAATCCATGATCTAGAATTCCAATTGGCCCATGCTTTTTCTGACAAGCTTAATCAGGAGCTCTCTTTATTGAAAGTAGAATATACTTCTCTATCTATATTTAAAGCTGAAGTTATCATTCACAGAACTAAGCAAAAATACTATTTTAATGTAGATAGGTCTAGTAGATTGCTTGCATTGAAACTCAAAGAGTGTGAATCTAAAGCCAGCATTGACGTAATCAAAACTAGCTCTGGTGAAATTACTACAGACCCTAAAGTTGTTAATGATGAGTTTAAATTATTTTATTCTATGTTGTATTCGTCTGAGGTTTCCCTTGACAGAGGAAAATGTTGTGATTTTCTCAGTGGTTTGAATCTTCCCACTTTACCAATTTCTGCTCAAGAATCCCTAGATGCACCCCTAACACTGGAGGAACTCCACAGCGCAGCTAAAATGTTACAGAAAGGTAAATCACCTGGCCCTGATGGAATTCCTCCGGAACTCTACCTAACTATCTGGGACATTGTTGGTCCCTTAATTCTAAAGTCCATGGTTTATGCCATTGATCATGGCACACTTCACAGAGACCAAAATGTAGCCCTCATTACTCTGTTGCTTAAAAAGGATAAAGACCCATTAAGTTGCTCTAGTTATCGCCCAATTTCTTTGATTTCAGCCGACGTGAAGATCCTAGCTAAAGCATTGGTTTTACGATTGGAACCATACATTGACAATCTGATCCATTATGACCAGACCGGCTTTCTGAAGGGCCGCCTAGCGTCGGATAATATGCGTCGACTGTTACACATTATCGACCTTGCTCGCACTAGCAATGTTACTTCTGCCATTTTCTCTTTGGATGCTCTCAAAGCGTTTGACAGACTTGAATGGGACTATTTATGGGCTGTTCTGGAGCGATTTGGATTCGGCCCTAAATTCTTAAATATTATACAACTGTTATATAAATGTCCTACTGCCTCTGTAATGACAGGGTCATGCGTGTCTGGGTGGACATTCACTCCAAAGTACCTTGGAGGAGTATTGAATCTGACTGTGTTCTCCCTCATAGGCTTCAAGATCTGCCTTTTACTGGTATAGGCTCAAGAAGTCTTCATCAGAAATTTGGAAACATTATTTCAACTACTTTAAAAGCCTGGTTTAATGCAGAAAAGATTACAGGTCATTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU306168 lncRNA upstream 31879 3976075 ~ 3976395 (+) True G269814
TU306165 lncRNA upstream 39633 3968428 ~ 3968641 (+) True G269811
TU306160 lncRNA upstream 45111 3962941 ~ 3963163 (+) True G269806
TU306145 lncRNA upstream 65083 3942981 ~ 3943191 (+) True G269791
TU306144 lncRNA upstream 65596 3942353 ~ 3942678 (+) True G269790
TU306190 lncRNA downstream 2054 4012248 ~ 4012477 (+) True G269833
TU306268 lncRNA downstream 223496 4233690 ~ 4234687 (+) True G269907
TU306269 lncRNA downstream 224861 4235055 ~ 4235333 (+) True G269908
TU306273 lncRNA downstream 234005 4244199 ~ 4244541 (+) True G269912
TU306276 lncRNA downstream 244497 4254691 ~ 4254968 (+) True G269915
CI01000065_03986974_04006773.mRNA mRNA upstream 1015 3986974 ~ 4007259 (+) True CI01000065_03986974_04006773
CI01000065_03980525_03983765.mRNA mRNA upstream 23351 3980525 ~ 3984923 (+) True CI01000065_03980525_03983765
CI01000065_03815841_03816140.mRNA mRNA upstream 191684 3812858 ~ 3816590 (+) True CI01000065_03815841_03816140
CI01000065_03709249_03716992.mRNA mRNA upstream 290366 3709144 ~ 3717908 (+) True CI01000065_03709249_03716992
CI01000065_03692428_03692874.mRNA mRNA upstream 314854 3692428 ~ 3693420 (+) True CI01000065_03692428_03692874
CI01000065_04044257_04051771.mRNA mRNA downstream 34063 4044257 ~ 4052283 (+) True CI01000065_04044257_04051771
CI01000065_04081314_04103789.mRNA mRNA downstream 71120 4081314 ~ 4103961 (+) True CI01000065_04081314_04103789
CI01000065_04115052_04165049.mRNA mRNA downstream 102084 4112278 ~ 4165429 (+) True CI01000065_04115052_04165049
CI01000065_04183838_04222038.mRNA mRNA downstream 173644 4183838 ~ 4222467 (+) True CI01000065_04183838_04222038
CI01000065_04247989_04251347.mRNA mRNA downstream 235469 4245663 ~ 4251797 (+) True CI01000065_04247989_04251347
TU305478 other upstream 455150 3552804 ~ 3553124 (+) False G269225
TU305428 other upstream 545346 3458957 ~ 3462928 (+) True G269181
TU304991 other upstream 1370069 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 1768276 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 2925619 1082153 ~ 1082655 (+) True G267577

Expression Profile